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Zinc in PDB 2oo7: Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (T179I/Q199R)

Enzymatic activity of Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (T179I/Q199R)

All present enzymatic activity of Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (T179I/Q199R):
2.7.4.3;

Protein crystallography data

The structure of Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (T179I/Q199R), PDB code: 2oo7 was solved by R.Counago, C.J.Wilson, G.Wu, J.C.Myers, P.Wittung-Stafshede, Y.Shamoo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 34.810, 75.760, 77.460, 90.00, 98.15, 90.00
R / Rfree (%) 19.7 / 24.5

Other elements in 2oo7:

The structure of Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (T179I/Q199R) also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (T179I/Q199R) (pdb code 2oo7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (T179I/Q199R), PDB code: 2oo7:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2oo7

Go back to Zinc Binding Sites List in 2oo7
Zinc binding site 1 out of 2 in the Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (T179I/Q199R)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (T179I/Q199R) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn920

b:16.1
occ:1.00
OD2 A:ASP153 2.2 17.0 1.0
SG A:CYS130 2.4 12.9 1.0
SG A:CYS133 2.4 14.8 1.0
SG A:CYS150 2.4 13.4 1.0
OD1 A:ASP153 2.8 20.0 1.0
CG A:ASP153 2.8 20.6 1.0
CB A:CYS130 3.1 11.9 1.0
CB A:CYS150 3.2 12.0 1.0
CB A:CYS133 3.3 14.9 1.0
N A:CYS133 3.6 14.9 1.0
CA A:CYS133 4.0 14.7 1.0
CB A:ASP153 4.3 21.7 1.0
CG2 A:THR135 4.3 14.9 1.0
N A:ASP153 4.4 20.3 1.0
CB A:VAL132 4.4 15.0 1.0
CB A:LYS152 4.5 19.6 1.0
CA A:CYS130 4.6 10.8 1.0
C A:VAL132 4.6 15.5 1.0
CA A:CYS150 4.7 12.8 1.0
C A:CYS133 4.8 14.5 1.0
N A:GLY134 4.8 13.2 1.0
CA A:VAL132 4.9 14.8 1.0
CA A:ASP153 4.9 19.5 1.0
CD A:LYS152 4.9 22.1 1.0
N A:VAL132 4.9 12.6 1.0
CG1 A:VAL132 5.0 14.6 1.0

Zinc binding site 2 out of 2 in 2oo7

Go back to Zinc Binding Sites List in 2oo7
Zinc binding site 2 out of 2 in the Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (T179I/Q199R)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (T179I/Q199R) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn921

b:14.9
occ:1.00
OD2 B:ASP153 2.2 13.8 1.0
SG B:CYS130 2.4 12.2 1.0
SG B:CYS133 2.4 13.0 1.0
SG B:CYS150 2.4 14.2 1.0
OD1 B:ASP153 2.7 14.7 1.0
CG B:ASP153 2.8 15.1 1.0
CB B:CYS150 3.1 13.1 1.0
CB B:CYS130 3.1 10.6 1.0
CB B:CYS133 3.3 12.3 1.0
N B:CYS133 3.6 13.2 1.0
CG2 B:THR135 3.9 16.9 1.0
CA B:CYS133 4.0 12.8 1.0
CB B:ASP153 4.2 14.9 1.0
O B:HOH1279 4.3 14.3 1.0
CB B:VAL132 4.3 15.5 1.0
N B:ASP153 4.4 16.6 1.0
CB B:LYS152 4.5 16.3 1.0
CA B:CYS130 4.6 12.0 1.0
C B:VAL132 4.6 14.3 1.0
CA B:CYS150 4.6 12.9 1.0
C B:CYS133 4.8 12.9 1.0
N B:GLY134 4.8 12.9 1.0
CD B:LYS152 4.8 20.6 1.0
CA B:VAL132 4.8 14.5 1.0
CG1 B:VAL132 4.9 15.3 1.0
N B:VAL132 4.9 14.1 1.0
CA B:ASP153 4.9 16.1 1.0
CE B:LYS152 4.9 23.6 1.0

Reference:

R.Counago, C.J.Wilson, G.Wu, J.C.Myers, P.Wittung-Stafshede, Y.Shamoo. Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (T179I/Q199R) To Be Published.
Page generated: Thu Oct 17 02:42:11 2024

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