Zinc in PDB 2ogj: Crystal Structure of A Dihydroorotase
Protein crystallography data
The structure of Crystal Structure of A Dihydroorotase, PDB code: 2ogj
was solved by
R.Sugadev,
D.Kumaran,
S.K.Burley,
S.Swaminathan,
New York Sgx Researchcenter For Structural Genomics (Nysgxrc),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
39.76 /
2.62
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
90.650,
139.200,
206.130,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
25.6 /
30.2
|
Zinc Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Zinc atom in the Crystal Structure of A Dihydroorotase
(pdb code 2ogj). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 12 binding sites of Zinc where determined in the
Crystal Structure of A Dihydroorotase, PDB code: 2ogj:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Zinc binding site 1 out
of 12 in 2ogj
Go back to
Zinc Binding Sites List in 2ogj
Zinc binding site 1 out
of 12 in the Crystal Structure of A Dihydroorotase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Crystal Structure of A Dihydroorotase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn418
b:42.9
occ:1.00
|
OQ2
|
A:KCX175
|
1.8
|
72.4
|
1.0
|
|
OD1
|
A:ASP291
|
2.1
|
48.6
|
1.0
|
|
NE2
|
A:HIS79
|
2.2
|
37.0
|
1.0
|
|
NE2
|
A:HIS77
|
2.4
|
35.9
|
1.0
|
|
CG
|
A:ASP291
|
2.9
|
48.4
|
1.0
|
|
CE1
|
A:HIS79
|
3.0
|
34.6
|
1.0
|
|
CX
|
A:KCX175
|
3.1
|
68.4
|
1.0
|
|
CE1
|
A:HIS77
|
3.3
|
34.6
|
1.0
|
|
CD2
|
A:HIS79
|
3.3
|
36.1
|
1.0
|
|
ZN
|
A:ZN419
|
3.3
|
60.4
|
1.0
|
|
OD2
|
A:ASP291
|
3.4
|
48.1
|
1.0
|
|
CD2
|
A:HIS77
|
3.5
|
37.1
|
1.0
|
|
OQ1
|
A:KCX175
|
3.6
|
70.5
|
1.0
|
|
NZ
|
A:KCX175
|
4.1
|
64.8
|
1.0
|
|
CB
|
A:ASP291
|
4.1
|
48.1
|
1.0
|
|
ND1
|
A:HIS79
|
4.2
|
33.2
|
1.0
|
|
CG
|
A:HIS79
|
4.4
|
34.8
|
1.0
|
|
CE
|
A:KCX175
|
4.5
|
58.7
|
1.0
|
|
ND1
|
A:HIS77
|
4.5
|
35.2
|
1.0
|
|
CG
|
A:HIS77
|
4.6
|
35.2
|
1.0
|
|
O
|
A:HOH421
|
4.6
|
29.9
|
1.0
|
|
CA
|
A:ASP291
|
4.8
|
46.2
|
1.0
|
|
CE1
|
A:HIS231
|
4.8
|
42.6
|
1.0
|
|
NE2
|
A:HIS231
|
4.8
|
44.5
|
1.0
|
|
CB
|
A:ALA106
|
4.9
|
30.2
|
1.0
|
|
O
|
A:ALA106
|
4.9
|
30.1
|
1.0
|
|
Zinc binding site 2 out
of 12 in 2ogj
Go back to
Zinc Binding Sites List in 2ogj
Zinc binding site 2 out
of 12 in the Crystal Structure of A Dihydroorotase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Crystal Structure of A Dihydroorotase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn419
b:60.4
occ:1.00
|
OQ1
|
A:KCX175
|
1.9
|
70.5
|
1.0
|
|
ND1
|
A:HIS208
|
2.4
|
49.7
|
1.0
|
|
NE2
|
A:HIS231
|
2.5
|
44.5
|
1.0
|
|
CX
|
A:KCX175
|
2.7
|
68.4
|
1.0
|
|
OQ2
|
A:KCX175
|
2.9
|
72.4
|
1.0
|
|
O
|
A:HOH421
|
3.1
|
29.9
|
1.0
|
|
CE1
|
A:HIS208
|
3.3
|
48.9
|
1.0
|
|
ZN
|
A:ZN418
|
3.3
|
42.9
|
1.0
|
|
CE1
|
A:HIS231
|
3.3
|
42.6
|
1.0
|
|
CG
|
A:HIS208
|
3.4
|
48.5
|
1.0
|
|
CD2
|
A:HIS231
|
3.5
|
43.2
|
1.0
|
|
CB
|
A:HIS208
|
3.7
|
46.5
|
1.0
|
|
NZ
|
A:KCX175
|
3.9
|
64.8
|
1.0
|
|
OD2
|
A:ASP291
|
4.2
|
48.1
|
1.0
|
|
CE1
|
A:HIS77
|
4.3
|
34.6
|
1.0
|
|
NE2
|
A:HIS208
|
4.4
|
47.8
|
1.0
|
|
NE2
|
A:HIS77
|
4.5
|
35.9
|
1.0
|
|
ND1
|
A:HIS231
|
4.5
|
46.2
|
1.0
|
|
CD2
|
A:HIS208
|
4.5
|
49.3
|
1.0
|
|
CG
|
A:ASP291
|
4.6
|
48.4
|
1.0
|
|
OD1
|
A:ASP291
|
4.6
|
48.6
|
1.0
|
|
NE
|
A:ARG177
|
4.6
|
43.9
|
1.0
|
|
CG
|
A:HIS231
|
4.6
|
43.9
|
1.0
|
|
CG
|
A:ARG177
|
4.7
|
44.3
|
1.0
|
|
CE
|
A:KCX175
|
4.7
|
58.7
|
1.0
|
|
Zinc binding site 3 out
of 12 in 2ogj
Go back to
Zinc Binding Sites List in 2ogj
Zinc binding site 3 out
of 12 in the Crystal Structure of A Dihydroorotase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Crystal Structure of A Dihydroorotase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn500
b:53.7
occ:1.00
|
OQ2
|
B:KCX175
|
2.0
|
65.1
|
1.0
|
|
NE2
|
B:HIS79
|
2.2
|
39.9
|
1.0
|
|
NE2
|
B:HIS77
|
2.4
|
46.9
|
1.0
|
|
OD2
|
B:ASP291
|
2.5
|
52.2
|
1.0
|
|
CG
|
B:ASP291
|
3.0
|
51.5
|
1.0
|
|
OD1
|
B:ASP291
|
3.0
|
53.0
|
1.0
|
|
CE1
|
B:HIS79
|
3.0
|
38.9
|
1.0
|
|
CX
|
B:KCX175
|
3.1
|
62.8
|
1.0
|
|
CE1
|
B:HIS77
|
3.2
|
46.5
|
1.0
|
|
CD2
|
B:HIS79
|
3.3
|
38.1
|
1.0
|
|
ZN
|
B:ZN501
|
3.3
|
73.2
|
1.0
|
|
OQ1
|
B:KCX175
|
3.4
|
65.0
|
1.0
|
|
CD2
|
B:HIS77
|
3.5
|
47.6
|
1.0
|
|
ND1
|
B:HIS79
|
4.2
|
39.2
|
1.0
|
|
NZ
|
B:KCX175
|
4.2
|
58.8
|
1.0
|
|
CG
|
B:HIS79
|
4.4
|
39.7
|
1.0
|
|
CB
|
B:ASP291
|
4.4
|
53.5
|
1.0
|
|
ND1
|
B:HIS77
|
4.4
|
47.1
|
1.0
|
|
O
|
B:HOH503
|
4.5
|
49.6
|
1.0
|
|
CG
|
B:HIS77
|
4.5
|
46.9
|
1.0
|
|
CE
|
B:KCX175
|
4.7
|
56.0
|
1.0
|
|
O
|
B:ALA106
|
4.7
|
38.6
|
1.0
|
|
CB
|
B:ALA106
|
4.7
|
36.8
|
1.0
|
|
CE1
|
B:HIS231
|
4.8
|
55.0
|
1.0
|
|
NE2
|
B:HIS231
|
4.8
|
54.3
|
1.0
|
|
Zinc binding site 4 out
of 12 in 2ogj
Go back to
Zinc Binding Sites List in 2ogj
Zinc binding site 4 out
of 12 in the Crystal Structure of A Dihydroorotase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Crystal Structure of A Dihydroorotase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn501
b:73.2
occ:1.00
|
OQ1
|
B:KCX175
|
2.4
|
65.0
|
1.0
|
|
NE2
|
B:HIS231
|
2.6
|
54.3
|
1.0
|
|
ND1
|
B:HIS208
|
2.7
|
58.4
|
1.0
|
|
O
|
B:HOH503
|
3.1
|
49.6
|
1.0
|
|
CE1
|
B:HIS231
|
3.2
|
55.0
|
1.0
|
|
CX
|
B:KCX175
|
3.3
|
62.8
|
1.0
|
|
ZN
|
B:ZN500
|
3.3
|
53.7
|
1.0
|
|
CE1
|
B:HIS208
|
3.4
|
57.3
|
1.0
|
|
OQ2
|
B:KCX175
|
3.6
|
65.1
|
1.0
|
|
CD2
|
B:HIS231
|
3.7
|
54.7
|
1.0
|
|
CG
|
B:HIS208
|
3.8
|
57.4
|
1.0
|
|
OD1
|
B:ASP291
|
3.8
|
53.0
|
1.0
|
|
CB
|
B:HIS208
|
4.1
|
55.4
|
1.0
|
|
CD
|
B:ARG177
|
4.2
|
51.1
|
1.0
|
|
CE1
|
B:HIS77
|
4.4
|
46.5
|
1.0
|
|
ND1
|
B:HIS231
|
4.4
|
55.2
|
1.0
|
|
NZ
|
B:KCX175
|
4.6
|
58.8
|
1.0
|
|
NE2
|
B:HIS77
|
4.6
|
46.9
|
1.0
|
|
NE2
|
B:HIS208
|
4.6
|
58.0
|
1.0
|
|
CG
|
B:HIS231
|
4.7
|
55.6
|
1.0
|
|
CG
|
B:ASP291
|
4.7
|
51.5
|
1.0
|
|
CG
|
B:ARG177
|
4.7
|
49.6
|
1.0
|
|
CD2
|
B:HIS208
|
4.8
|
57.0
|
1.0
|
|
NH1
|
B:ARG177
|
4.8
|
49.6
|
1.0
|
|
Zinc binding site 5 out
of 12 in 2ogj
Go back to
Zinc Binding Sites List in 2ogj
Zinc binding site 5 out
of 12 in the Crystal Structure of A Dihydroorotase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Crystal Structure of A Dihydroorotase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn600
b:65.9
occ:1.00
|
OD1
|
C:ASP291
|
1.9
|
79.8
|
1.0
|
|
OQ2
|
C:KCX175
|
2.0
|
76.6
|
1.0
|
|
NE2
|
C:HIS79
|
2.4
|
63.3
|
1.0
|
|
NE2
|
C:HIS77
|
2.4
|
64.5
|
1.0
|
|
CG
|
C:ASP291
|
2.8
|
79.7
|
1.0
|
|
ZN
|
C:ZN601
|
3.0
|
87.5
|
1.0
|
|
CX
|
C:KCX175
|
3.2
|
75.3
|
1.0
|
|
CE1
|
C:HIS77
|
3.2
|
63.6
|
1.0
|
|
OD2
|
C:ASP291
|
3.2
|
80.1
|
1.0
|
|
CE1
|
C:HIS79
|
3.3
|
62.2
|
1.0
|
|
CD2
|
C:HIS79
|
3.4
|
62.8
|
1.0
|
|
CD2
|
C:HIS77
|
3.5
|
64.3
|
1.0
|
|
OQ1
|
C:KCX175
|
3.6
|
78.9
|
1.0
|
|
N1
|
C:IMD3744
|
3.6
|
69.8
|
1.0
|
|
C5
|
C:IMD3744
|
3.7
|
69.4
|
1.0
|
|
CB
|
C:ASP291
|
4.1
|
80.5
|
1.0
|
|
NZ
|
C:KCX175
|
4.2
|
72.8
|
1.0
|
|
ND1
|
C:HIS77
|
4.4
|
63.7
|
1.0
|
|
ND1
|
C:HIS79
|
4.4
|
61.6
|
1.0
|
|
CG
|
C:HIS79
|
4.5
|
62.5
|
1.0
|
|
CG
|
C:HIS77
|
4.6
|
64.9
|
1.0
|
|
CB
|
C:ALA106
|
4.8
|
58.9
|
1.0
|
|
CE1
|
C:HIS231
|
4.8
|
64.4
|
1.0
|
|
CE
|
C:KCX175
|
4.8
|
71.7
|
1.0
|
|
CA
|
C:ASP291
|
4.8
|
80.7
|
1.0
|
|
NE2
|
C:HIS231
|
4.9
|
64.8
|
1.0
|
|
C2
|
C:IMD3744
|
4.9
|
69.8
|
1.0
|
|
O
|
C:ALA106
|
4.9
|
58.1
|
1.0
|
|
Zinc binding site 6 out
of 12 in 2ogj
Go back to
Zinc Binding Sites List in 2ogj
Zinc binding site 6 out
of 12 in the Crystal Structure of A Dihydroorotase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Crystal Structure of A Dihydroorotase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn601
b:87.5
occ:1.00
|
OQ1
|
C:KCX175
|
1.9
|
78.9
|
1.0
|
|
N1
|
C:IMD3744
|
2.2
|
69.8
|
1.0
|
|
NE2
|
C:HIS231
|
2.5
|
64.8
|
1.0
|
|
ND1
|
C:HIS208
|
2.5
|
56.7
|
1.0
|
|
CX
|
C:KCX175
|
2.6
|
75.3
|
1.0
|
|
OQ2
|
C:KCX175
|
2.7
|
76.6
|
1.0
|
|
ZN
|
C:ZN600
|
3.0
|
65.9
|
1.0
|
|
C2
|
C:IMD3744
|
3.1
|
69.8
|
1.0
|
|
CE1
|
C:HIS231
|
3.2
|
64.4
|
1.0
|
|
CE1
|
C:HIS208
|
3.3
|
56.5
|
1.0
|
|
C5
|
C:IMD3744
|
3.4
|
69.4
|
1.0
|
|
CG
|
C:HIS208
|
3.7
|
57.6
|
1.0
|
|
CD2
|
C:HIS231
|
3.7
|
63.6
|
1.0
|
|
CE1
|
C:HIS77
|
3.8
|
63.6
|
1.0
|
|
NZ
|
C:KCX175
|
3.8
|
72.8
|
1.0
|
|
NE2
|
C:HIS77
|
4.0
|
64.5
|
1.0
|
|
CB
|
C:HIS208
|
4.1
|
59.1
|
1.0
|
|
NH1
|
C:ARG177
|
4.2
|
60.1
|
1.0
|
|
OD1
|
C:ASP291
|
4.2
|
79.8
|
1.0
|
|
OD2
|
C:ASP291
|
4.3
|
80.1
|
1.0
|
|
N3
|
C:IMD3744
|
4.3
|
70.0
|
1.0
|
|
CG
|
C:ASP291
|
4.4
|
79.7
|
1.0
|
|
CG
|
C:ARG177
|
4.4
|
55.9
|
1.0
|
|
ND1
|
C:HIS231
|
4.4
|
65.4
|
1.0
|
|
C4
|
C:IMD3744
|
4.5
|
69.5
|
1.0
|
|
NE2
|
C:HIS208
|
4.5
|
56.9
|
1.0
|
|
CD
|
C:ARG177
|
4.6
|
57.2
|
1.0
|
|
CG
|
C:HIS231
|
4.7
|
65.2
|
1.0
|
|
CD2
|
C:HIS208
|
4.7
|
58.2
|
1.0
|
|
CG2
|
C:THR230
|
4.8
|
66.7
|
1.0
|
|
CE
|
C:KCX175
|
4.9
|
71.7
|
1.0
|
|
Zinc binding site 7 out
of 12 in 2ogj
Go back to
Zinc Binding Sites List in 2ogj
Zinc binding site 7 out
of 12 in the Crystal Structure of A Dihydroorotase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Crystal Structure of A Dihydroorotase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn700
b:60.1
occ:1.00
|
OQ2
|
D:KCX175
|
1.8
|
71.6
|
1.0
|
|
NE2
|
D:HIS77
|
2.4
|
38.4
|
1.0
|
|
NE2
|
D:HIS79
|
2.4
|
44.9
|
1.0
|
|
OD2
|
D:ASP291
|
2.7
|
53.8
|
1.0
|
|
CX
|
D:KCX175
|
3.0
|
68.9
|
1.0
|
|
ZN
|
D:ZN701
|
3.2
|
71.6
|
1.0
|
|
CE1
|
D:HIS77
|
3.2
|
34.5
|
1.0
|
|
CE1
|
D:HIS79
|
3.2
|
45.7
|
1.0
|
|
CG
|
D:ASP291
|
3.4
|
54.3
|
1.0
|
|
OQ1
|
D:KCX175
|
3.4
|
72.5
|
1.0
|
|
CD2
|
D:HIS77
|
3.5
|
38.6
|
1.0
|
|
C5
|
D:IMD3745
|
3.5
|
61.6
|
1.0
|
|
CD2
|
D:HIS79
|
3.5
|
47.2
|
1.0
|
|
OD1
|
D:ASP291
|
3.6
|
54.5
|
1.0
|
|
N1
|
D:IMD3745
|
3.7
|
62.4
|
1.0
|
|
NZ
|
D:KCX175
|
4.1
|
64.5
|
1.0
|
|
ND1
|
D:HIS77
|
4.4
|
36.4
|
1.0
|
|
ND1
|
D:HIS79
|
4.4
|
45.8
|
1.0
|
|
NE2
|
D:HIS231
|
4.4
|
44.1
|
1.0
|
|
CB
|
D:ASP291
|
4.5
|
56.4
|
1.0
|
|
CG
|
D:HIS77
|
4.5
|
40.2
|
1.0
|
|
CG
|
D:HIS79
|
4.6
|
46.4
|
1.0
|
|
CE1
|
D:HIS231
|
4.6
|
43.3
|
1.0
|
|
CE
|
D:KCX175
|
4.7
|
62.5
|
1.0
|
|
CB
|
D:ALA106
|
4.8
|
50.5
|
1.0
|
|
C4
|
D:IMD3745
|
4.8
|
61.3
|
1.0
|
|
CA
|
D:ASP291
|
5.0
|
55.6
|
1.0
|
|
Zinc binding site 8 out
of 12 in 2ogj
Go back to
Zinc Binding Sites List in 2ogj
Zinc binding site 8 out
of 12 in the Crystal Structure of A Dihydroorotase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Crystal Structure of A Dihydroorotase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn701
b:71.6
occ:1.00
|
OQ1
|
D:KCX175
|
1.9
|
72.5
|
1.0
|
|
ND1
|
D:HIS208
|
2.3
|
53.5
|
1.0
|
|
N1
|
D:IMD3745
|
2.4
|
62.4
|
1.0
|
|
NE2
|
D:HIS231
|
2.4
|
44.1
|
1.0
|
|
CX
|
D:KCX175
|
2.7
|
68.9
|
1.0
|
|
OQ2
|
D:KCX175
|
3.0
|
71.6
|
1.0
|
|
ZN
|
D:ZN700
|
3.2
|
60.1
|
1.0
|
|
CE1
|
D:HIS208
|
3.2
|
53.5
|
1.0
|
|
CD2
|
D:HIS231
|
3.3
|
46.1
|
1.0
|
|
C5
|
D:IMD3745
|
3.3
|
61.6
|
1.0
|
|
CG
|
D:HIS208
|
3.4
|
52.9
|
1.0
|
|
CE1
|
D:HIS231
|
3.4
|
43.3
|
1.0
|
|
C2
|
D:IMD3745
|
3.4
|
61.4
|
1.0
|
|
CB
|
D:HIS208
|
3.8
|
52.3
|
1.0
|
|
NZ
|
D:KCX175
|
4.0
|
64.5
|
1.0
|
|
CE1
|
D:HIS77
|
4.1
|
34.5
|
1.0
|
|
NE2
|
D:HIS77
|
4.3
|
38.4
|
1.0
|
|
NE2
|
D:HIS208
|
4.4
|
53.9
|
1.0
|
|
NE
|
D:ARG177
|
4.4
|
54.7
|
1.0
|
|
OD1
|
D:ASP291
|
4.4
|
54.5
|
1.0
|
|
CG
|
D:HIS231
|
4.5
|
46.8
|
1.0
|
|
CD2
|
D:HIS208
|
4.5
|
53.7
|
1.0
|
|
ND1
|
D:HIS231
|
4.5
|
45.5
|
1.0
|
|
C4
|
D:IMD3745
|
4.5
|
61.3
|
1.0
|
|
CG
|
D:ARG177
|
4.6
|
52.1
|
1.0
|
|
N3
|
D:IMD3745
|
4.6
|
61.4
|
1.0
|
|
CE
|
D:KCX175
|
4.9
|
62.5
|
1.0
|
|
CD
|
D:ARG177
|
5.0
|
53.6
|
1.0
|
|
CG
|
D:ASP291
|
5.0
|
54.3
|
1.0
|
|
Zinc binding site 9 out
of 12 in 2ogj
Go back to
Zinc Binding Sites List in 2ogj
Zinc binding site 9 out
of 12 in the Crystal Structure of A Dihydroorotase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 9 of Crystal Structure of A Dihydroorotase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Zn800
b:59.4
occ:1.00
|
NE2
|
E:HIS79
|
2.0
|
38.3
|
1.0
|
|
NE2
|
E:HIS77
|
2.1
|
55.6
|
1.0
|
|
OQ2
|
E:KCX175
|
2.2
|
75.0
|
1.0
|
|
OD1
|
E:ASP291
|
2.2
|
58.9
|
1.0
|
|
CE1
|
E:HIS79
|
2.9
|
36.9
|
1.0
|
|
CE1
|
E:HIS77
|
3.0
|
54.0
|
1.0
|
|
CD2
|
E:HIS79
|
3.0
|
38.3
|
1.0
|
|
CD2
|
E:HIS77
|
3.2
|
55.1
|
1.0
|
|
CG
|
E:ASP291
|
3.3
|
59.0
|
1.0
|
|
ZN
|
E:ZN801
|
3.3
|
86.9
|
1.0
|
|
CX
|
E:KCX175
|
3.5
|
73.5
|
1.0
|
|
OD2
|
E:ASP291
|
3.8
|
58.7
|
1.0
|
|
OQ1
|
E:KCX175
|
4.0
|
77.8
|
1.0
|
|
ND1
|
E:HIS79
|
4.1
|
36.6
|
1.0
|
|
ND1
|
E:HIS77
|
4.1
|
54.3
|
1.0
|
|
CG
|
E:HIS79
|
4.1
|
38.8
|
1.0
|
|
CG
|
E:HIS77
|
4.3
|
54.5
|
1.0
|
|
CB
|
E:ASP291
|
4.4
|
59.9
|
1.0
|
|
NZ
|
E:KCX175
|
4.4
|
70.6
|
1.0
|
|
CB
|
E:ALA106
|
4.6
|
40.2
|
1.0
|
|
O
|
E:ALA106
|
4.7
|
46.7
|
1.0
|
|
CE1
|
E:HIS231
|
4.7
|
61.9
|
1.0
|
|
NE2
|
E:HIS231
|
4.7
|
61.2
|
1.0
|
|
CA
|
E:ASP291
|
4.8
|
59.4
|
1.0
|
|
O
|
E:HOH804
|
4.8
|
51.8
|
1.0
|
|
CE
|
E:KCX175
|
4.9
|
67.0
|
1.0
|
|
Zinc binding site 10 out
of 12 in 2ogj
Go back to
Zinc Binding Sites List in 2ogj
Zinc binding site 10 out
of 12 in the Crystal Structure of A Dihydroorotase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 10 of Crystal Structure of A Dihydroorotase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Zn801
b:86.9
occ:1.00
|
OQ1
|
E:KCX175
|
1.8
|
77.8
|
1.0
|
|
NE2
|
E:HIS231
|
2.4
|
61.2
|
1.0
|
|
CX
|
E:KCX175
|
2.5
|
73.5
|
1.0
|
|
OQ2
|
E:KCX175
|
2.6
|
75.0
|
1.0
|
|
ND1
|
E:HIS208
|
2.6
|
63.6
|
1.0
|
|
ZN
|
E:ZN800
|
3.3
|
59.4
|
1.0
|
|
CE1
|
E:HIS231
|
3.3
|
61.9
|
1.0
|
|
CE1
|
E:HIS208
|
3.5
|
63.9
|
1.0
|
|
CG
|
E:HIS208
|
3.5
|
61.6
|
1.0
|
|
CD2
|
E:HIS231
|
3.5
|
61.1
|
1.0
|
|
CB
|
E:HIS208
|
3.7
|
59.3
|
1.0
|
|
NZ
|
E:KCX175
|
3.8
|
70.6
|
1.0
|
|
CE1
|
E:HIS77
|
3.8
|
54.0
|
1.0
|
|
O
|
E:HOH804
|
4.0
|
51.8
|
1.0
|
|
NE2
|
E:HIS77
|
4.1
|
55.6
|
1.0
|
|
NE
|
E:ARG177
|
4.4
|
66.5
|
1.0
|
|
ND1
|
E:HIS231
|
4.5
|
62.3
|
1.0
|
|
NE2
|
E:HIS208
|
4.5
|
63.1
|
1.0
|
|
CD2
|
E:HIS208
|
4.5
|
61.9
|
1.0
|
|
OD1
|
E:ASP291
|
4.6
|
58.9
|
1.0
|
|
OD2
|
E:ASP291
|
4.6
|
58.7
|
1.0
|
|
CG
|
E:HIS231
|
4.6
|
60.1
|
1.0
|
|
CG
|
E:ARG177
|
4.6
|
59.9
|
1.0
|
|
CE
|
E:KCX175
|
4.7
|
67.0
|
1.0
|
|
CG
|
E:ASP291
|
4.9
|
59.0
|
1.0
|
|
Reference:
R.Sugadev,
D.Kumaran,
S.K.Burley,
S.Swaminathan.
Crystal Structure of A Dihydroorotase To Be Published.
Page generated: Thu Oct 17 02:38:05 2024
|
