Zinc in PDB 2my1: Solution Structure of BUD31P

The binding sites of Zinc atom in the Solution Structure of BUD31P (pdb code 2my1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Solution Structure of BUD31P, PDB code: 2my1:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Solution Structure of BUD31P


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of BUD31P within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1000 b:0.0 occ:1.00 SG A:CYS148 2.3 0.0 1.0 SG A:CYS104 2.3 0.0 1.0 SG A:CYS108 2.3 0.0 1.0 SG A:CYS105 2.3 0.0 1.0 HB3 A:CYS108 2.9 0.0 1.0 CB A:CYS108 3.0 0.0 1.0 HB2 A:CYS108 3.2 0.0 1.0 HB3 A:CYS148 3.2 0.0 1.0 HB2 A:CYS104 3.3 0.0 1.0 HB2 A:CYS105 3.4 0.0 1.0 CB A:CYS148 3.4 0.0 1.0 CB A:CYS104 3.5 0.0 1.0 CB A:CYS105 3.5 0.0 1.0 HB2 A:CYS150 3.5 0.0 1.0 H A:CYS105 3.7 0.0 1.0 ZN A:ZN1002 3.7 0.0 1.0 N A:CYS105 3.8 0.0 1.0 HB2 A:CYS148 3.9 0.0 1.0 ZN A:ZN1001 3.9 0.0 1.0 HB3 A:CYS150 4.0 0.0 1.0 C A:CYS104 4.0 0.0 1.0 CB A:CYS150 4.2 0.0 1.0 H A:CYS148 4.2 0.0 1.0 HB3 A:CYS104 4.3 0.0 1.0 CA A:CYS105 4.3 0.0 1.0 HB3 A:CYS105 4.3 0.0 1.0 CA A:CYS104 4.3 0.0 1.0 HB2 A:HIS147 4.4 0.0 1.0 SG A:CYS145 4.5 0.0 1.0 SG A:CYS122 4.5 0.0 1.0 CA A:CYS108 4.5 0.0 1.0 O A:CYS104 4.6 0.0 1.0 N A:CYS148 4.6 0.0 1.0 CA A:CYS148 4.7 0.0 1.0 H A:CYS104 4.7 0.0 1.0 HE3 A:MET53 4.9 0.0 1.0 HG23 A:ILE109 4.9 0.0 1.0 HB3 A:HIS147 4.9 0.0 1.0 HA A:CYS108 4.9 0.0 1.0 HE1 A:MET53 4.9 0.0 1.0 SG A:CYS150 4.9 0.0 1.0 O A:CYS108 5.0 0.0 1.0 HA A:CYS105 5.0 0.0 1.0

Zinc binding site 2 out of 3 in the Solution Structure of BUD31P


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of BUD31P within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1001 b:0.0 occ:1.00 SG A:CYS153 2.3 0.0 1.0 SG A:CYS150 2.3 0.0 1.0 SG A:CYS104 2.3 0.0 1.0 SG A:CYS122 2.3 0.0 1.0 HB3 A:CYS104 3.1 0.0 1.0 H A:CYS153 3.1 0.0 1.0 HB2 A:CYS122 3.2 0.0 1.0 HB3 A:CYS153 3.2 0.0 1.0 CB A:CYS150 3.3 0.0 1.0 CB A:CYS104 3.3 0.0 1.0 HB2 A:CYS150 3.4 0.0 1.0 CB A:CYS122 3.4 0.0 1.0 CB A:CYS153 3.4 0.0 1.0 HB3 A:CYS150 3.4 0.0 1.0 N A:CYS153 3.9 0.0 1.0 ZN A:ZN1002 3.9 0.0 1.0 H A:CYS104 3.9 0.0 1.0 ZN A:ZN1000 3.9 0.0 1.0 HB2 A:CYS104 4.0 0.0 1.0 HB3 A:CYS122 4.0 0.0 1.0 HB2 A:CYS153 4.2 0.0 1.0 CA A:CYS153 4.3 0.0 1.0 HG21 A:ILE109 4.4 0.0 1.0 N A:CYS104 4.4 0.0 1.0 C A:CYS122 4.4 0.0 1.0 HG23 A:ILE109 4.5 0.0 1.0 SG A:CYS108 4.5 0.0 1.0 CA A:CYS122 4.5 0.0 1.0 CA A:CYS104 4.5 0.0 1.0 HB3 A:CYS108 4.6 0.0 1.0 O A:CYS108 4.6 0.0 1.0 N A:ARG123 4.6 0.0 1.0 H A:GLY152 4.6 0.0 1.0 HA2 A:GLY152 4.7 0.0 1.0 O A:CYS153 4.7 0.0 1.0 CA A:CYS150 4.7 0.0 1.0 HA A:ARG123 4.7 0.0 1.0 O A:CYS122 4.7 0.0 1.0 SG A:CYS148 4.8 0.0 1.0 HG22 A:ILE109 4.8 0.0 1.0 CG2 A:ILE109 4.8 0.0 1.0 H A:ARG123 4.8 0.0 1.0 SG A:CYS145 4.8 0.0 1.0 C A:GLY152 4.9 0.0 1.0 H A:CYS105 4.9 0.0 1.0

Zinc binding site 3 out of 3 in the Solution Structure of BUD31P


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Solution Structure of BUD31P within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1002 b:0.0 occ:1.00 SG A:CYS120 2.3 0.0 1.0 SG A:CYS122 2.3 0.0 1.0 SG A:CYS108 2.3 0.0 1.0 SG A:CYS145 2.3 0.0 1.0 HB3 A:CYS122 3.0 0.0 1.0 HB3 A:CYS120 3.3 0.0 1.0 CB A:CYS122 3.3 0.0 1.0 CB A:CYS145 3.3 0.0 1.0 HB3 A:CYS145 3.3 0.0 1.0 CB A:CYS120 3.3 0.0 1.0 HB2 A:HIS147 3.4 0.0 1.0 HB2 A:CYS145 3.4 0.0 1.0 H A:CYS122 3.5 0.0 1.0 HB2 A:CYS120 3.7 0.0 1.0 ZN A:ZN1000 3.7 0.0 1.0 HD2 A:HIS147 3.8 0.0 1.0 O A:CYS108 3.8 0.0 1.0 CB A:CYS108 3.8 0.0 1.0 ZN A:ZN1001 3.9 0.0 1.0 HA A:CYS108 4.0 0.0 1.0 HB3 A:CYS150 4.0 0.0 1.0 HB2 A:CYS122 4.0 0.0 1.0 HB3 A:CYS108 4.1 0.0 1.0 N A:CYS122 4.2 0.0 1.0 CA A:CYS108 4.2 0.0 1.0 H A:ARG123 4.3 0.0 1.0 H A:CYS148 4.3 0.0 1.0 SG A:CYS148 4.3 0.0 1.0 CA A:CYS122 4.3 0.0 1.0 SG A:CYS104 4.4 0.0 1.0 CB A:HIS147 4.4 0.0 1.0 CD2 A:HIS147 4.4 0.0 1.0 C A:CYS108 4.5 0.0 1.0 HB2 A:CYS108 4.6 0.0 1.0 CA A:CYS120 4.7 0.0 1.0 H A:CYS145 4.7 0.0 1.0 CG A:HIS147 4.7 0.0 1.0 CA A:CYS145 4.7 0.0 1.0 HB3 A:HIS147 4.8 0.0 1.0 H A:ILE121 4.8 0.0 1.0 CB A:CYS150 4.8 0.0 1.0 N A:ARG123 4.9 0.0 1.0 H A:HIS147 4.9 0.0 1.0 C A:CYS120 4.9 0.0 1.0 HZ A:PHE142 4.9 0.0 1.0 HB2 A:CYS150 5.0 0.0 1.0 N A:ILE121 5.0 0.0 1.0 HG22 A:ILE121 5.0 0.0 1.0

A.M.Van Roon, J.C.Yang, D.Mathieu, W.Bermel, K.Nagai, D.Neuhaus. (113) Cd uc(Nmr) Experiments Reveal An Unusual Metal Cluster in the Solution Structure of the Yeast Splicing Protein BUD31P. Angew.Chem.Int.Ed.Engl. 2015.
ISSN: ESSN 1521-3773
PubMed: 25703931
DOI: 10.1002/ANIE.201412210