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Zinc in PDB 2mxp: Solution Structure of NDP52 Ubiquitin-Binding Zinc Finger

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of NDP52 Ubiquitin-Binding Zinc Finger (pdb code 2mxp). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Solution Structure of NDP52 Ubiquitin-Binding Zinc Finger, PDB code: 2mxp:

Zinc binding site 1 out of 1 in 2mxp

Go back to Zinc Binding Sites List in 2mxp
Zinc binding site 1 out of 1 in the Solution Structure of NDP52 Ubiquitin-Binding Zinc Finger


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of NDP52 Ubiquitin-Binding Zinc Finger within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn101

b:0.0
occ:1.00
NE2 A:HIS75 2.0 0.0 1.0
NE2 A:HIS79 2.0 0.0 1.0
SG A:CYS60 2.3 0.0 1.0
SG A:CYS57 2.3 0.0 1.0
H A:CYS60 2.8 0.0 1.0
CD2 A:HIS79 2.9 0.0 1.0
CD2 A:HIS75 2.9 0.0 1.0
CE1 A:HIS79 3.0 0.0 1.0
HD2 A:HIS75 3.0 0.0 1.0
CE1 A:HIS75 3.1 0.0 1.0
HD2 A:HIS79 3.1 0.0 1.0
HB3 A:CYS60 3.1 0.0 1.0
HB A:ILE59 3.2 0.0 1.0
HB3 A:LYS62 3.2 0.0 1.0
HB3 A:CYS57 3.2 0.0 1.0
CB A:CYS60 3.3 0.0 1.0
CB A:CYS57 3.3 0.0 1.0
HE1 A:HIS79 3.3 0.0 1.0
HE1 A:HIS75 3.4 0.0 1.0
N A:CYS60 3.5 0.0 1.0
H A:LYS62 3.5 0.0 1.0
HB2 A:CYS57 3.6 0.0 1.0
HB2 A:LYS62 3.7 0.0 1.0
HD12 A:ILE59 3.9 0.0 1.0
CA A:CYS60 3.9 0.0 1.0
CB A:LYS62 3.9 0.0 1.0
CG A:HIS79 4.0 0.0 1.0
ND1 A:HIS79 4.0 0.0 1.0
CG A:HIS75 4.1 0.0 1.0
H A:ASP61 4.1 0.0 1.0
ND1 A:HIS75 4.1 0.0 1.0
HB2 A:CYS60 4.2 0.0 1.0
CB A:ILE59 4.2 0.0 1.0
HG21 A:ILE59 4.4 0.0 1.0
N A:LYS62 4.4 0.0 1.0
H A:ILE59 4.5 0.0 1.0
C A:ILE59 4.5 0.0 1.0
C A:CYS60 4.5 0.0 1.0
N A:ASP61 4.5 0.0 1.0
CD1 A:ILE59 4.7 0.0 1.0
HD13 A:ILE59 4.7 0.0 1.0
CA A:CYS57 4.7 0.0 1.0
HG2 A:LYS62 4.8 0.0 1.0
CA A:ILE59 4.8 0.0 1.0
CA A:LYS62 4.8 0.0 1.0
HA A:VAL76 4.8 0.0 1.0
HA A:CYS60 4.8 0.0 1.0
CG2 A:ILE59 4.9 0.0 1.0
HZ A:PHE64 4.9 0.0 1.0
HD1 A:HIS79 4.9 0.0 1.0
O A:CYS57 4.9 0.0 1.0
N A:ILE59 4.9 0.0 1.0

Reference:

X.Xie, F.Li, Y.Wang, Y.Wang, Z.Lin, X.Cheng, J.Liu, C.Chen, L.Pan. Molecular Basis of Ubiquitin Recognition By the Autophagy Receptor CALCOCO2 Autophagy V. 11 1775 2015.
ISSN: ISSN 1554-8627
PubMed: 26506893
DOI: 10.1080/15548627.2015.1082025
Page generated: Wed Dec 16 03:41:11 2020

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