Zinc in PDB 2mvw: Solution Structure of the TRIM19 B-BOX1 (B1) of Human Promyelocytic Leukemia (Pml)

The binding sites of Zinc atom in the Solution Structure of the TRIM19 B-BOX1 (B1) of Human Promyelocytic Leukemia (Pml) (pdb code 2mvw). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Solution Structure of the TRIM19 B-BOX1 (B1) of Human Promyelocytic Leukemia (Pml), PDB code: 2mvw:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Solution Structure of the TRIM19 B-BOX1 (B1) of Human Promyelocytic Leukemia (Pml)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the TRIM19 B-BOX1 (B1) of Human Promyelocytic Leukemia (Pml) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 SG A:CYS151 2.5 0.0 1.0 SG A:CYS132 2.5 0.0 1.0 SG A:CYS148 2.6 0.0 1.0 SG A:CYS129 2.6 0.0 1.0 H A:CYS148 3.1 0.0 1.0 H A:CYS132 3.2 0.0 1.0 HB2 A:CYS151 3.4 0.0 1.0 CB A:CYS151 3.6 0.0 1.0 HB3 A:CYS148 3.6 0.0 1.0 HB2 A:CYS132 3.7 0.0 1.0 HB2 A:ARG131 3.7 0.0 1.0 CB A:CYS148 3.7 0.0 1.0 HB3 A:ARG131 3.8 0.0 1.0 CB A:CYS132 3.8 0.0 1.0 CB A:CYS129 3.9 0.0 1.0 N A:CYS148 4.0 0.0 1.0 N A:CYS132 4.0 0.0 1.0 H A:CYS151 4.1 0.0 1.0 HB2 A:CYS129 4.1 0.0 1.0 HB3 A:CYS129 4.1 0.0 1.0 HB3 A:CYS151 4.2 0.0 1.0 CB A:ARG131 4.3 0.0 1.0 HA A:LEU147 4.3 0.0 1.0 HD2 A:ARG131 4.4 0.0 1.0 HB3 A:LYS150 4.4 0.0 1.0 H A:ARG131 4.4 0.0 1.0 N A:CYS151 4.5 0.0 1.0 CA A:CYS148 4.5 0.0 1.0 HB2 A:CYS148 4.6 0.0 1.0 HB3 A:CYS132 4.6 0.0 1.0 HB2 A:LYS150 4.6 0.0 1.0 CA A:CYS132 4.6 0.0 1.0 CA A:CYS151 4.7 0.0 1.0 C A:LEU147 5.0 0.0 1.0

Zinc binding site 2 out of 4 in the Solution Structure of the TRIM19 B-BOX1 (B1) of Human Promyelocytic Leukemia (Pml)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the TRIM19 B-BOX1 (B1) of Human Promyelocytic Leukemia (Pml) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:0.0 occ:1.00 CE1 A:HIS161 2.3 0.0 1.0 ND1 A:HIS161 2.4 0.0 1.0 NE2 A:HIS161 2.4 0.0 1.0 NE2 A:HIS155 2.4 0.0 1.0 CD2 A:HIS161 2.4 0.0 1.0 CG A:HIS161 2.4 0.0 1.0 SG A:CYS140 2.5 0.0 1.0 SG A:CYS143 2.5 0.0 1.0 HD1 A:HIS161 2.9 0.0 1.0 HE1 A:HIS161 3.0 0.0 1.0 HD2 A:HIS161 3.1 0.0 1.0 CD2 A:HIS155 3.3 0.0 1.0 HD2 A:HIS155 3.4 0.0 1.0 CB A:HIS161 3.5 0.0 1.0 CE1 A:HIS155 3.5 0.0 1.0 HB3 A:CYS140 3.5 0.0 1.0 HB3 A:HIS161 3.5 0.0 1.0 CB A:CYS140 3.6 0.0 1.0 HB2 A:HIS161 3.7 0.0 1.0 HE1 A:HIS155 3.7 0.0 1.0 H A:CYS143 3.7 0.0 1.0 HB2 A:CYS143 3.7 0.0 1.0 CB A:CYS143 3.9 0.0 1.0 HB2 A:CYS140 3.9 0.0 1.0 HD13 A:LEU159 4.0 0.0 1.0 HB2 A:GLU142 4.2 0.0 1.0 HB3 A:CYS143 4.5 0.0 1.0 N A:CYS143 4.5 0.0 1.0 CG A:HIS155 4.5 0.0 1.0 ND1 A:HIS155 4.6 0.0 1.0 HD11 A:LEU159 4.8 0.0 1.0 CA A:HIS161 4.8 0.0 1.0 HB3 A:GLU142 4.8 0.0 1.0 HA A:HIS161 4.9 0.0 1.0 CA A:CYS140 4.9 0.0 1.0 CD1 A:LEU159 4.9 0.0 1.0 CA A:CYS143 4.9 0.0 1.0 HD23 A:LEU159 4.9 0.0 1.0 HA A:CYS140 4.9 0.0 1.0 HD22 A:LEU159 5.0 0.0 1.0 CB A:GLU142 5.0 0.0 1.0

Zinc binding site 3 out of 4 in the Solution Structure of the TRIM19 B-BOX1 (B1) of Human Promyelocytic Leukemia (Pml)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Solution Structure of the TRIM19 B-BOX1 (B1) of Human Promyelocytic Leukemia (Pml) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:0.0 occ:1.00 SG B:CYS148 2.5 0.0 1.0 SG B:CYS129 2.6 0.0 1.0 SG B:CYS132 2.6 0.0 1.0 SG B:CYS151 2.6 0.0 1.0 H B:CYS148 2.8 0.0 1.0 HB3 B:CYS148 3.2 0.0 1.0 H B:CYS132 3.4 0.0 1.0 CB B:CYS148 3.5 0.0 1.0 HB2 B:CYS151 3.6 0.0 1.0 HB2 B:CYS132 3.6 0.0 1.0 HB2 B:ARG131 3.6 0.0 1.0 N B:CYS148 3.7 0.0 1.0 CB B:CYS132 3.8 0.0 1.0 CB B:CYS151 3.8 0.0 1.0 CB B:CYS129 3.8 0.0 1.0 HB2 B:CYS129 3.9 0.0 1.0 HH11 B:ARG131 3.9 0.0 1.0 HB3 B:CYS129 4.0 0.0 1.0 HB3 B:ARG131 4.1 0.0 1.0 HA B:LEU147 4.1 0.0 1.0 N B:CYS132 4.1 0.0 1.0 HH12 B:ARG131 4.2 0.0 1.0 HB3 B:LYS150 4.2 0.0 1.0 H B:CYS151 4.2 0.0 1.0 HD22 B:LEU147 4.2 0.0 1.0 CA B:CYS148 4.3 0.0 1.0 HB2 B:CYS148 4.3 0.0 1.0 CB B:ARG131 4.4 0.0 1.0 NH1 B:ARG131 4.4 0.0 1.0 HB3 B:CYS151 4.4 0.0 1.0 HZ2 B:LYS150 4.5 0.0 1.0 H B:ARG131 4.5 0.0 1.0 HB3 B:CYS132 4.5 0.0 1.0 N B:CYS151 4.6 0.0 1.0 CA B:CYS132 4.6 0.0 1.0 C B:LEU147 4.8 0.0 1.0 HE3 B:LYS150 4.8 0.0 1.0 CA B:CYS151 4.9 0.0 1.0 CA B:LEU147 4.9 0.0 1.0

Zinc binding site 4 out of 4 in the Solution Structure of the TRIM19 B-BOX1 (B1) of Human Promyelocytic Leukemia (Pml)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Solution Structure of the TRIM19 B-BOX1 (B1) of Human Promyelocytic Leukemia (Pml) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn202 b:0.0 occ:1.00 NE2 B:HIS161 2.3 0.0 1.0 NE2 B:HIS155 2.3 0.0 1.0 SG B:CYS140 2.5 0.0 1.0 SG B:CYS143 2.6 0.0 1.0 CD2 B:HIS161 2.6 0.0 1.0 HD2 B:HIS155 2.7 0.0 1.0 CD2 B:HIS155 2.8 0.0 1.0 HB3 B:CYS140 2.9 0.0 1.0 HD2 B:HIS161 2.9 0.0 1.0 CE1 B:HIS161 2.9 0.0 1.0 CB B:CYS140 3.2 0.0 1.0 HB2 B:CYS143 3.3 0.0 1.0 CG B:HIS161 3.4 0.0 1.0 CE1 B:HIS155 3.4 0.0 1.0 HE1 B:HIS161 3.5 0.0 1.0 H B:CYS143 3.6 0.0 1.0 ND1 B:HIS161 3.6 0.0 1.0 CB B:CYS143 3.6 0.0 1.0 HB2 B:CYS140 3.7 0.0 1.0 CG B:HIS155 3.9 0.0 1.0 HE1 B:HIS155 4.0 0.0 1.0 HD12 B:LEU147 4.1 0.0 1.0 ND1 B:HIS155 4.3 0.0 1.0 HB3 B:CYS143 4.3 0.0 1.0 N B:CYS143 4.3 0.0 1.0 HB3 B:GLU142 4.4 0.0 1.0 HD1 B:HIS161 4.4 0.0 1.0 CA B:CYS140 4.5 0.0 1.0 HA B:CYS140 4.5 0.0 1.0 CB B:HIS161 4.6 0.0 1.0 HB3 B:HIS161 4.6 0.0 1.0 CA B:CYS143 4.7 0.0 1.0 HB2 B:GLU142 4.7 0.0 1.0 OE1 B:GLN145 4.7 0.0 1.0 HD13 B:LEU147 4.8 0.0 1.0 CD1 B:LEU147 4.8 0.0 1.0 H B:GLU142 4.9 0.0 1.0 HG2 B:GLN145 4.9 0.0 1.0 HB2 B:HIS161 5.0 0.0 1.0

S.Y.Huang, M.T.Naik, C.F.Chang, P.J.Fang, Y.H.Wang, H.M.Shih, T.H.Huang. The B-Box 1 Dimer of Human Promyelocytic Leukemia Protein. J.Biomol.uc(Nmr) 2014.
ISSN: ISSN 0925-2738
PubMed: 25355412
DOI: 10.1007/S10858-014-9869-4