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Zinc in PDB 2ms0: Solution uc(Nmr) Structure Pf Trnapro:Mlv-Nucleocapsid (1:2) Complex

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution uc(Nmr) Structure Pf Trnapro:Mlv-Nucleocapsid (1:2) Complex (pdb code 2ms0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution uc(Nmr) Structure Pf Trnapro:Mlv-Nucleocapsid (1:2) Complex, PDB code: 2ms0:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2ms0

Go back to Zinc Binding Sites List in 2ms0
Zinc binding site 1 out of 2 in the Solution uc(Nmr) Structure Pf Trnapro:Mlv-Nucleocapsid (1:2) Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution uc(Nmr) Structure Pf Trnapro:Mlv-Nucleocapsid (1:2) Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn101

b:0.0
occ:1.00
NE2 A:HIS34 2.4 0.0 1.0
SG A:CYS39 2.6 0.0 1.0
SG A:CYS29 2.6 0.0 1.0
SG A:CYS26 2.6 0.0 1.0
HD2 A:PRO40 2.7 0.0 1.0
HA A:CYS39 2.8 0.0 1.0
HB2 A:CYS39 2.8 0.0 1.0
HB2 A:CYS26 3.1 0.0 1.0
CB A:CYS39 3.1 0.0 1.0
HB3 A:CYS26 3.1 0.0 1.0
CB A:CYS26 3.2 0.0 1.0
CD2 A:HIS34 3.3 0.0 1.0
HD2 A:HIS34 3.3 0.0 1.0
HB3 A:CYS29 3.4 0.0 1.0
CA A:CYS39 3.5 0.0 1.0
H A:CYS29 3.5 0.0 1.0
CE1 A:HIS34 3.6 0.0 1.0
CB A:CYS29 3.6 0.0 1.0
HB2 A:GLU31 3.6 0.0 1.0
CD A:PRO40 3.7 0.0 1.0
HE1 A:HIS34 3.9 0.0 1.0
HB3 A:TYR28 3.9 0.0 1.0
HD3 A:PRO40 4.0 0.0 1.0
HB3 A:CYS39 4.2 0.0 1.0
N A:CYS29 4.2 0.0 1.0
HA A:ALA36 4.2 0.0 1.0
H A:GLU31 4.2 0.0 1.0
H A:LYS41 4.3 0.0 1.0
C A:CYS39 4.4 0.0 1.0
N A:PRO40 4.4 0.0 1.0
CA A:CYS29 4.4 0.0 1.0
HB2 A:CYS29 4.5 0.0 1.0
CG A:HIS34 4.5 0.0 1.0
N A:CYS39 4.5 0.0 1.0
ND1 A:HIS34 4.6 0.0 1.0
HG2 A:PRO40 4.6 0.0 1.0
CA A:CYS26 4.7 0.0 1.0
CB A:GLU31 4.7 0.0 1.0
HD2 A:TYR28 4.7 0.0 1.0
H A:TYR28 4.8 0.0 1.0
CG A:PRO40 4.8 0.0 1.0
H A:LYS30 4.8 0.0 1.0
H A:CYS39 4.9 0.0 1.0
HG3 A:GLU31 4.9 0.0 1.0
O A:TRP35 4.9 0.0 1.0
HB2 A:LYS41 4.9 0.0 1.0

Zinc binding site 2 out of 2 in 2ms0

Go back to Zinc Binding Sites List in 2ms0
Zinc binding site 2 out of 2 in the Solution uc(Nmr) Structure Pf Trnapro:Mlv-Nucleocapsid (1:2) Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution uc(Nmr) Structure Pf Trnapro:Mlv-Nucleocapsid (1:2) Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn201

b:0.0
occ:1.00
NE2 C:HIS134 2.5 0.0 1.0
SG C:CYS129 2.6 0.0 1.0
SG C:CYS139 2.6 0.0 1.0
SG C:CYS126 2.6 0.0 1.0
HB2 C:CYS139 2.9 0.0 1.0
HB3 C:CYS126 3.0 0.0 1.0
HD2 C:PRO140 3.1 0.0 1.0
HB2 C:CYS126 3.1 0.0 1.0
CB C:CYS126 3.1 0.0 1.0
HA C:CYS139 3.1 0.0 1.0
CB C:CYS139 3.2 0.0 1.0
HD2 C:HIS134 3.2 0.0 1.0
CD2 C:HIS134 3.2 0.0 1.0
HB3 C:CYS129 3.5 0.0 1.0
HB2 C:GLU131 3.5 0.0 1.0
H C:CYS129 3.6 0.0 1.0
CE1 C:HIS134 3.6 0.0 1.0
CB C:CYS129 3.6 0.0 1.0
HB3 C:TYR128 3.7 0.0 1.0
HZ1 C:LYS141 3.7 0.0 1.0
CA C:CYS139 3.7 0.0 1.0
HE1 C:HIS134 4.0 0.0 1.0
CD C:PRO140 4.1 0.0 1.0
H C:GLU131 4.1 0.0 1.0
N C:CYS129 4.2 0.0 1.0
HB3 C:CYS139 4.2 0.0 1.0
HD2 C:TYR128 4.2 0.0 1.0
HA C:ALA136 4.2 0.0 1.0
HD3 C:PRO140 4.3 0.0 1.0
CA C:CYS129 4.4 0.0 1.0
HZ3 C:LYS141 4.4 0.0 1.0
CG C:HIS134 4.5 0.0 1.0
HB2 C:CYS129 4.5 0.0 1.0
NZ C:LYS141 4.5 0.0 1.0
HD2 C:LYS141 4.6 0.0 1.0
CB C:GLU131 4.6 0.0 1.0
CA C:CYS126 4.6 0.0 1.0
H C:LYS141 4.7 0.0 1.0
ND1 C:HIS134 4.7 0.0 1.0
C C:CYS139 4.7 0.0 1.0
HG3 C:LYS141 4.7 0.0 1.0
CB C:TYR128 4.8 0.0 1.0
H C:TYR128 4.8 0.0 1.0
N C:PRO140 4.8 0.0 1.0
N C:CYS139 4.8 0.0 1.0
H C:LYS130 4.8 0.0 1.0
O C:TRP135 4.9 0.0 1.0
N C:GLU131 4.9 0.0 1.0
C C:CYS129 5.0 0.0 1.0

Reference:

S.B.Miller, F.Z.Yildiz, J.A.Lo, B.Wang, V.M.D'souza. A Structure-Based Mechanism For Trna and Retroviral Rna Remodelling During Primer Annealing. Nature 2014.
ISSN: ESSN 1476-4687
PubMed: 25209668
DOI: 10.1038/NATURE13709
Page generated: Wed Dec 16 03:40:59 2020

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