Zinc in PDB 2mqv: Solution uc(Nmr) Structure of the U5-Primer Binding Site (U5-Pbs) Domain of Murine Leukemia Virus Rna Genome Bound to the Retroviral Nucleocapsid Protein

The binding sites of Zinc atom in the Solution uc(Nmr) Structure of the U5-Primer Binding Site (U5-Pbs) Domain of Murine Leukemia Virus Rna Genome Bound to the Retroviral Nucleocapsid Protein (pdb code 2mqv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Solution uc(Nmr) Structure of the U5-Primer Binding Site (U5-Pbs) Domain of Murine Leukemia Virus Rna Genome Bound to the Retroviral Nucleocapsid Protein, PDB code: 2mqv:

Zinc binding site 1 out of 1 in the Solution uc(Nmr) Structure of the U5-Primer Binding Site (U5-Pbs) Domain of Murine Leukemia Virus Rna Genome Bound to the Retroviral Nucleocapsid Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution uc(Nmr) Structure of the U5-Primer Binding Site (U5-Pbs) Domain of Murine Leukemia Virus Rna Genome Bound to the Retroviral Nucleocapsid Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn101 b:0.0 occ:1.00 SG A:CYS39 2.2 0.0 1.0 NE2 A:HIS34 2.5 0.0 1.0 SG A:CYS29 2.7 0.0 1.0 SG A:CYS26 2.7 0.0 1.0 HD2 A:PRO40 2.7 0.0 1.0 HB2 A:CYS39 2.7 0.0 1.0 HA A:CYS39 2.8 0.0 1.0 CB A:CYS39 2.9 0.0 1.0 HB3 A:CYS29 3.3 0.0 1.0 H A:CYS29 3.3 0.0 1.0 HB2 A:CYS26 3.4 0.0 1.0 CB A:CYS26 3.4 0.0 1.0 CA A:CYS39 3.4 0.0 1.0 HB3 A:CYS26 3.4 0.0 1.0 CD2 A:HIS34 3.4 0.0 1.0 HD2 A:HIS34 3.5 0.0 1.0 CE1 A:HIS34 3.5 0.0 1.0 CB A:CYS29 3.6 0.0 1.0 HB3 A:TYR28 3.7 0.0 1.0 CD A:PRO40 3.7 0.0 1.0 HE1 A:HIS34 3.7 0.0 1.0 HB3 A:CYS39 3.9 0.0 1.0 HD3 A:PRO40 4.0 0.0 1.0 N A:CYS29 4.0 0.0 1.0 H A:LYS41 4.1 0.0 1.0 HD2 A:TYR28 4.1 0.0 1.0 HA A:ALA36 4.1 0.0 1.0 HB3 A:GLU31 4.1 0.0 1.0 C A:CYS39 4.2 0.0 1.0 N A:PRO40 4.3 0.0 1.0 CA A:CYS29 4.4 0.0 1.0 HB2 A:CYS29 4.4 0.0 1.0 HB2 A:LYS41 4.4 0.0 1.0 H A:GLU31 4.5 0.0 1.0 N A:CYS39 4.5 0.0 1.0 HB2 A:GLU31 4.6 0.0 1.0 CG A:HIS34 4.6 0.0 1.0 ND1 A:HIS34 4.7 0.0 1.0 HG2 A:PRO40 4.7 0.0 1.0 CB A:TYR28 4.8 0.0 1.0 H A:TYR28 4.8 0.0 1.0 HG3 A:LYS41 4.8 0.0 1.0 CG A:PRO40 4.8 0.0 1.0 H A:CYS39 4.8 0.0 1.0 CA A:CYS26 4.9 0.0 1.0 CB A:GLU31 4.9 0.0 1.0 H A:LYS30 4.9 0.0 1.0

S.B.Miller, F.Z.Yildiz, J.A.Lo, B.Wang, V.M.D'souza. A Structure-Based Mechanism For Trna and Retroviral Rna Remodelling During Primer Annealing. Nature 2014.
ISSN: ESSN 1476-4687
PubMed: 25209668
DOI: 10.1038/NATURE13709