Zinc in PDB 2kuo: Structure and Identification of Adp-Ribose Recognition Motifs of Aplf and Role in the Dna Damage Response

The binding sites of Zinc atom in the Structure and Identification of Adp-Ribose Recognition Motifs of Aplf and Role in the Dna Damage Response (pdb code 2kuo). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure and Identification of Adp-Ribose Recognition Motifs of Aplf and Role in the Dna Damage Response, PDB code: 2kuo:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure and Identification of Adp-Ribose Recognition Motifs of Aplf and Role in the Dna Damage Response


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure and Identification of Adp-Ribose Recognition Motifs of Aplf and Role in the Dna Damage Response within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn449 b:0.0 occ:1.00 NE2 A:HIS398 1.6 0.0 1.0 SG A:CYS385 1.7 0.0 1.0 NE2 A:HIS392 1.7 0.0 1.0 SG A:CYS379 1.8 0.0 1.0 CD2 A:HIS398 2.6 0.0 1.0 CD2 A:HIS392 2.6 0.0 1.0 CE1 A:HIS398 2.7 0.0 1.0 CE1 A:HIS392 2.8 0.0 1.0 HD2 A:HIS392 2.8 0.0 1.0 HD2 A:HIS398 2.9 0.0 1.0 CB A:CYS385 3.0 0.0 1.0 HE1 A:HIS398 3.0 0.0 1.0 HE1 A:HIS392 3.2 0.0 1.0 HB3 A:CYS385 3.2 0.0 1.0 O A:GLY382 3.2 0.0 1.0 CB A:CYS379 3.2 0.0 1.0 HB2 A:CYS385 3.3 0.0 1.0 HB2 A:CYS379 3.4 0.0 1.0 HB3 A:CYS379 3.6 0.0 1.0 CG A:HIS398 3.7 0.0 1.0 ND1 A:HIS398 3.8 0.0 1.0 CG A:HIS392 3.8 0.0 1.0 ND1 A:HIS392 3.8 0.0 1.0 HB2 A:TYR381 4.1 0.0 1.0 H A:CYS385 4.1 0.0 1.0 H A:GLY382 4.2 0.0 1.0 C A:GLY382 4.3 0.0 1.0 CA A:CYS385 4.4 0.0 1.0 CA A:CYS379 4.5 0.0 1.0 N A:GLY382 4.6 0.0 1.0 HB3 A:PHE396 4.6 0.0 1.0 HA A:CYS379 4.6 0.0 1.0 O A:ARG387 4.6 0.0 1.0 HB2 A:PHE396 4.6 0.0 1.0 HA2 A:GLY382 4.6 0.0 1.0 HD1 A:HIS398 4.7 0.0 1.0 N A:CYS385 4.7 0.0 1.0 HB2 A:ARG387 4.7 0.0 1.0 CA A:GLY382 4.7 0.0 1.0 HD1 A:HIS392 4.8 0.0 1.0 HD2 A:TYR381 4.9 0.0 1.0 H A:TYR381 4.9 0.0 1.0 O A:CYS385 4.9 0.0 1.0 C A:CYS385 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Structure and Identification of Adp-Ribose Recognition Motifs of Aplf and Role in the Dna Damage Response


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure and Identification of Adp-Ribose Recognition Motifs of Aplf and Role in the Dna Damage Response within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn450 b:0.0 occ:1.00 NE2 A:HIS434 1.7 0.0 1.0 SG A:CYS427 1.7 0.0 1.0 NE2 A:HIS440 1.7 0.0 1.0 SG A:CYS421 1.8 0.0 1.0 CD2 A:HIS434 2.6 0.0 1.0 CB A:CYS427 2.7 0.0 1.0 HB3 A:CYS427 2.7 0.0 1.0 CD2 A:HIS440 2.7 0.0 1.0 CE1 A:HIS434 2.7 0.0 1.0 CE1 A:HIS440 2.8 0.0 1.0 HB2 A:CYS427 2.8 0.0 1.0 HD2 A:HIS434 2.9 0.0 1.0 HD2 A:HIS440 3.0 0.0 1.0 HE1 A:HIS440 3.1 0.0 1.0 HE1 A:HIS434 3.1 0.0 1.0 CB A:CYS421 3.4 0.0 1.0 HB2 A:ARG429 3.4 0.0 1.0 HB2 A:CYS421 3.5 0.0 1.0 CG A:HIS434 3.8 0.0 1.0 HB3 A:CYS421 3.8 0.0 1.0 ND1 A:HIS434 3.8 0.0 1.0 ND1 A:HIS440 3.9 0.0 1.0 CG A:HIS440 3.9 0.0 1.0 HD2 A:TYR423 3.9 0.0 1.0 HB2 A:TYR423 3.9 0.0 1.0 HG3 A:ARG429 4.1 0.0 1.0 CA A:CYS427 4.1 0.0 1.0 HB2 A:TYR438 4.3 0.0 1.0 H A:ARG429 4.3 0.0 1.0 HG2 A:ARG429 4.4 0.0 1.0 HD2 A:PRO422 4.4 0.0 1.0 CB A:ARG429 4.4 0.0 1.0 HA A:CYS427 4.4 0.0 1.0 O A:GLY424 4.5 0.0 1.0 HA A:CYS421 4.5 0.0 1.0 CG A:ARG429 4.5 0.0 1.0 CA A:CYS421 4.5 0.0 1.0 H A:TYR423 4.6 0.0 1.0 C A:CYS427 4.6 0.0 1.0 HD1 A:HIS434 4.8 0.0 1.0 HD1 A:HIS440 4.8 0.0 1.0 HA A:LYS435 4.8 0.0 1.0 HG2 A:LYS435 4.8 0.0 1.0 O A:CYS427 4.8 0.0 1.0 CD2 A:TYR423 4.9 0.0 1.0 HB3 A:TYR438 4.9 0.0 1.0 H A:CYS427 4.9 0.0 1.0 CB A:TYR423 5.0 0.0 1.0

G.Y.Li, R.D.Mcculloch, A.Fenton, M.Cheung, L.Meng, M.Ikura, C.A.Koch. Structure and Identification of Adp-Ribose Recognition Motifs of Aprataxin Pnk-Like Factor (Aplf) Required For the Interaction with Sites of Dna Damage Response To Be Published.