Zinc in PDB 2kiz: Solution Structure of Arkadia Ring-H2 Finger Domain

The binding sites of Zinc atom in the Solution Structure of Arkadia Ring-H2 Finger Domain (pdb code 2kiz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of Arkadia Ring-H2 Finger Domain, PDB code: 2kiz:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of Arkadia Ring-H2 Finger Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of Arkadia Ring-H2 Finger Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn70 b:0.4 occ:1.00 SG A:CYS20 2.1 1.0 1.0 SG A:CYS43 2.1 0.3 1.0 ND1 A:HIS40 2.1 0.5 1.0 SG A:CYS17 2.1 0.4 1.0 HB2 A:HIS40 3.0 0.6 1.0 CE1 A:HIS40 3.1 0.7 1.0 CG A:HIS40 3.2 0.4 1.0 HB2 A:CYS20 3.2 1.3 1.0 CB A:CYS43 3.3 0.3 1.0 CB A:CYS20 3.3 0.5 1.0 CB A:CYS17 3.3 0.3 1.0 HE1 A:HIS40 3.3 0.9 1.0 H A:CYS20 3.4 0.3 1.0 HB2 A:CYS43 3.4 0.3 1.0 HB2 A:CYS17 3.4 0.4 1.0 H A:HIS40 3.5 0.3 1.0 HB3 A:CYS17 3.5 0.4 1.0 CB A:HIS40 3.6 0.4 1.0 HB3 A:CYS43 3.6 0.3 1.0 HB A:ILE19 3.8 0.3 1.0 N A:CYS20 3.9 0.3 1.0 HB3 A:CYS20 4.1 1.2 1.0 CA A:CYS20 4.2 0.4 1.0 NE2 A:HIS40 4.3 0.8 1.0 N A:HIS40 4.3 0.2 1.0 CD2 A:HIS40 4.3 0.6 1.0 HD21 A:LEU24 4.3 1.3 1.0 HB3 A:HIS40 4.4 0.7 1.0 HB3 A:PHE39 4.5 0.3 1.0 HD22 A:LEU24 4.5 1.7 1.0 CA A:HIS40 4.6 0.3 1.0 CA A:CYS43 4.6 0.4 1.0 H A:ILE19 4.6 0.3 1.0 CA A:CYS17 4.7 0.3 1.0 HG22 A:ILE19 4.7 1.5 1.0 HA A:CYS20 4.7 0.5 1.0 HA A:CYS43 4.8 0.4 1.0 HD1 A:PHE39 4.8 2.5 1.0 HA A:CYS17 4.8 0.3 1.0 CB A:ILE19 4.8 0.4 1.0 H A:CYS43 4.8 0.3 1.0 C A:ILE19 4.9 0.3 1.0 HG12 A:VAL42 4.9 1.9 1.0 CD2 A:LEU24 5.0 0.7 1.0

Zinc binding site 2 out of 2 in the Solution Structure of Arkadia Ring-H2 Finger Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of Arkadia Ring-H2 Finger Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn71 b:0.8 occ:1.00 SG A:CYS35 2.1 1.4 1.0 SG A:CYS54 2.1 0.8 1.0 ND1 A:HIS37 2.1 0.7 1.0 SG A:CYS57 2.2 0.8 1.0 HB3 A:CYS35 3.0 1.4 1.0 CE1 A:HIS37 3.1 0.8 1.0 HD12 A:LEU33 3.1 2.2 1.0 H A:HIS37 3.1 0.6 1.0 CB A:CYS35 3.1 0.8 1.0 H A:CYS57 3.1 0.6 1.0 CG A:HIS37 3.2 0.7 1.0 HB2 A:CYS54 3.2 0.8 1.0 HE1 A:HIS37 3.3 0.8 1.0 CB A:CYS54 3.3 0.5 1.0 HB2 A:HIS37 3.3 0.7 1.0 HB2 A:CYS35 3.6 1.1 1.0 CB A:CYS57 3.6 0.8 1.0 HB3 A:CYS57 3.6 1.1 1.0 HB3 A:CYS54 3.7 0.7 1.0 HB A:ILE56 3.7 0.8 1.0 CB A:HIS37 3.8 0.7 1.0 CD1 A:LEU33 3.9 1.1 1.0 HD13 A:LEU33 4.0 1.6 1.0 HD11 A:LEU33 4.0 1.9 1.0 N A:CYS57 4.1 0.6 1.0 N A:HIS37 4.1 0.5 1.0 HB2 A:MET36 4.1 1.8 1.0 NE2 A:HIS37 4.3 0.8 1.0 CD2 A:HIS37 4.3 0.8 1.0 HB2 A:CYS57 4.4 1.0 1.0 HD2 A:PRO55 4.4 0.5 1.0 H A:MET36 4.4 0.7 1.0 CA A:CYS35 4.4 0.8 1.0 CA A:CYS57 4.5 0.6 1.0 H A:ILE56 4.5 0.7 1.0 N A:MET36 4.5 0.8 1.0 CA A:HIS37 4.6 0.5 1.0 CA A:CYS54 4.6 0.4 1.0 C A:CYS35 4.6 0.9 1.0 HA A:CYS54 4.6 0.5 1.0 HB3 A:HIS37 4.6 0.7 1.0 CB A:ILE56 4.8 0.7 1.0 CB A:MET36 4.9 1.1 1.0 HA A:CYS35 4.9 0.9 1.0 HG22 A:ILE56 4.9 1.3 1.0 H A:ARG58 5.0 0.5 1.0 HD12 A:ILE56 5.0 1.3 1.0

C.T.Chasapis, N.G.Kandias, V.Episkopou, D.Bentrop, G.A.Spyroulias. uc(Nmr)-Based Insights Into the Conformational and Interaction Properties of Arkadia Ring-H2 E3 Ub Ligase. Proteins V. 80 1484 2012.
ISSN: ISSN 0887-3585
PubMed: 22411132
DOI: 10.1002/PROT.24048