Zinc in PDB 2kgi: Solution Structure of JARID1A C-Terminal Phd Finger in Complex with H3(1-9)K4ME3

The binding sites of Zinc atom in the Solution Structure of JARID1A C-Terminal Phd Finger in Complex with H3(1-9)K4ME3 (pdb code 2kgi). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of JARID1A C-Terminal Phd Finger in Complex with H3(1-9)K4ME3, PDB code: 2kgi:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of JARID1A C-Terminal Phd Finger in Complex with H3(1-9)K4ME3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of JARID1A C-Terminal Phd Finger in Complex with H3(1-9)K4ME3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn53 b:0.0 occ:1.00 SG A:CYS21 2.3 0.0 1.0 SG A:CYS25 2.3 0.0 1.0 SG A:CYS51 2.3 0.0 1.0 SG A:CYS48 2.3 0.0 1.0 HZ A:PHE29 3.0 0.0 1.0 H A:CYS25 3.1 0.0 1.0 HB2 A:CYS51 3.1 0.0 1.0 HB3 A:CYS25 3.2 0.0 1.0 H A:CYS48 3.3 0.0 1.0 CB A:CYS21 3.3 0.0 1.0 CB A:CYS51 3.3 0.0 1.0 HB3 A:CYS21 3.3 0.0 1.0 CB A:CYS25 3.4 0.0 1.0 HB2 A:CYS21 3.4 0.0 1.0 HB3 A:CYS48 3.4 0.0 1.0 CB A:CYS48 3.4 0.0 1.0 H A:CYS51 3.7 0.0 1.0 HB2 A:ASN50 3.8 0.0 1.0 N A:CYS25 3.8 0.0 1.0 N A:CYS48 3.9 0.0 1.0 HB3 A:CYS51 4.1 0.0 1.0 CZ A:PHE29 4.1 0.0 1.0 N A:CYS51 4.1 0.0 1.0 CA A:CYS25 4.1 0.0 1.0 CA A:CYS48 4.2 0.0 1.0 HB2 A:CYS25 4.2 0.0 1.0 H A:GLY23 4.3 0.0 1.0 HB2 A:CYS48 4.3 0.0 1.0 CA A:CYS51 4.3 0.0 1.0 O A:CYS48 4.5 0.0 1.0 HA A:ILE47 4.5 0.0 1.0 HE2 A:PHE29 4.5 0.0 1.0 HA3 A:GLY23 4.6 0.0 1.0 H A:ASP26 4.6 0.0 1.0 C A:CYS48 4.7 0.0 1.0 HG22 A:ILE47 4.7 0.0 1.0 CA A:CYS21 4.7 0.0 1.0 CE2 A:PHE29 4.8 0.0 1.0 HA A:CYS51 4.8 0.0 1.0 H A:ASN50 4.9 0.0 1.0 CB A:ASN50 4.9 0.0 1.0 H A:GLU27 4.9 0.0 1.0 C A:GLY23 4.9 0.0 1.0 N A:GLY24 4.9 0.0 1.0 H A:GLY24 5.0 0.0 1.0 C A:CYS25 5.0 0.0 1.0 C A:ASN50 5.0 0.0 1.0 HE1 A:PHE29 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of JARID1A C-Terminal Phd Finger in Complex with H3(1-9)K4ME3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of JARID1A C-Terminal Phd Finger in Complex with H3(1-9)K4ME3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn54 b:0.0 occ:1.00 ND1 A:HIS30 2.0 0.0 1.0 SG A:CYS3 2.3 0.0 1.0 SG A:CYS8 2.3 0.0 1.0 SG A:CYS33 2.3 0.0 1.0 H A:HIS30 2.7 0.0 1.0 HB2 A:HIS30 2.9 0.0 1.0 CE1 A:HIS30 3.0 0.0 1.0 CG A:HIS30 3.0 0.0 1.0 HB3 A:CYS3 3.1 0.0 1.0 HB2 A:CYS8 3.2 0.0 1.0 HE1 A:HIS30 3.2 0.0 1.0 CB A:CYS3 3.3 0.0 1.0 HB3 A:CYS33 3.4 0.0 1.0 CB A:CYS33 3.4 0.0 1.0 N A:HIS30 3.4 0.0 1.0 CB A:CYS8 3.4 0.0 1.0 CB A:HIS30 3.4 0.0 1.0 H A:CYS3 3.4 0.0 1.0 HB2 A:CYS33 3.5 0.0 1.0 HA A:PHE29 3.7 0.0 1.0 H A:GLN9 3.9 0.0 1.0 HB1 A:ALA5 4.0 0.0 1.0 CA A:HIS30 4.0 0.0 1.0 H A:ALA5 4.0 0.0 1.0 NE2 A:HIS30 4.1 0.0 1.0 O A:GLN9 4.1 0.0 1.0 N A:CYS3 4.1 0.0 1.0 HB3 A:CYS8 4.1 0.0 1.0 CD2 A:HIS30 4.2 0.0 1.0 HB2 A:CYS3 4.2 0.0 1.0 HA A:CYS8 4.2 0.0 1.0 CA A:CYS3 4.2 0.0 1.0 C A:PHE29 4.2 0.0 1.0 HB3 A:HIS30 4.4 0.0 1.0 CA A:CYS8 4.4 0.0 1.0 HB3 A:PHE29 4.4 0.0 1.0 CA A:PHE29 4.5 0.0 1.0 C A:CYS3 4.5 0.0 1.0 O A:CYS3 4.5 0.0 1.0 HB2 A:ALA5 4.5 0.0 1.0 N A:GLN9 4.7 0.0 1.0 O A:HIS30 4.7 0.0 1.0 H A:CYS33 4.7 0.0 1.0 CB A:ALA5 4.8 0.0 1.0 CA A:CYS33 4.8 0.0 1.0 HA A:HIS30 4.8 0.0 1.0 C A:HIS30 4.9 0.0 1.0 HE2 A:HIS30 4.9 0.0 1.0 N A:ALA5 4.9 0.0 1.0 HA A:VAL2 5.0 0.0 1.0

G.G.Wang, J.Song, Z.Wang, H.L.Dormann, F.Casadio, H.Li, J.L.Luo, D.J.Patel, C.D.Allis. Haematopoietic Malignancies Caused By Dysregulation of A Chromatin-Binding Phd Finger. Nature V. 459 847 2009.
ISSN: ISSN 0028-0836
PubMed: 19430464
DOI: 10.1038/NATURE08036