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Zinc in PDB 2kdx: Solution Structure of Hypa Protein

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of Hypa Protein (pdb code 2kdx). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Solution Structure of Hypa Protein, PDB code: 2kdx:

Zinc binding site 1 out of 1 in 2kdx

Go back to Zinc Binding Sites List in 2kdx
Zinc binding site 1 out of 1 in the Solution Structure of Hypa Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of Hypa Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn120

b:0.0
occ:1.00
SG A:CYS96 2.2 0.0 1.0
SG A:CYS93 2.2 0.0 1.0
SG A:CYS76 2.2 0.0 1.0
SG A:CYS79 2.2 0.0 1.0
HB2 A:CYS79 3.0 0.0 1.0
H A:CYS96 3.2 0.0 1.0
HB3 A:CYS93 3.2 0.0 1.0
CB A:CYS79 3.2 0.0 1.0
CB A:CYS93 3.2 0.0 1.0
CB A:CYS76 3.2 0.0 1.0
HB3 A:CYS76 3.3 0.0 1.0
HB2 A:CYS76 3.4 0.0 1.0
HB2 A:CYS93 3.4 0.0 1.0
CB A:CYS96 3.5 0.0 1.0
HB3 A:CYS79 3.6 0.0 1.0
HB2 A:LYS95 3.6 0.0 1.0
HB3 A:CYS96 3.7 0.0 1.0
N A:CYS96 3.9 0.0 1.0
HD22 A:ASN100 4.1 0.0 1.0
CA A:CYS96 4.2 0.0 1.0
O A:CYS96 4.2 0.0 1.0
HB3 A:HIS81 4.3 0.0 1.0
H A:SER80 4.4 0.0 1.0
HB2 A:CYS96 4.4 0.0 1.0
H A:LYS95 4.6 0.0 1.0
CA A:CYS79 4.6 0.0 1.0
CA A:CYS76 4.6 0.0 1.0
C A:CYS96 4.6 0.0 1.0
CA A:CYS93 4.7 0.0 1.0
HA A:CYS79 4.7 0.0 1.0
CB A:LYS95 4.7 0.0 1.0
OD1 A:ASN100 4.8 0.0 1.0
HA A:CYS76 4.8 0.0 1.0

Reference:

W.Xia, H.Li, K.-H.Sze, H.Sun. Structure of A Nickel Chaperone, Hypa, From Helicobacter Pylori Reveals Two Distinct Metal Binding Sites J.Am.Chem.Soc. V. 131 10031 2009.
ISSN: ISSN 0002-7863
PubMed: 19621959
DOI: 10.1021/JA900543Y
Page generated: Wed Dec 16 03:34:08 2020

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