Zinc in PDB 2kdp: Solution Structure of the SAP30 Zinc Finger Motif

The binding sites of Zinc atom in the Solution Structure of the SAP30 Zinc Finger Motif (pdb code 2kdp). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Solution Structure of the SAP30 Zinc Finger Motif, PDB code: 2kdp:

Zinc binding site 1 out of 1 in the Solution Structure of the SAP30 Zinc Finger Motif


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the SAP30 Zinc Finger Motif within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1 b:0.0 occ:1.00 ND1 A:HIS115 2.0 0.0 1.0 SG A:CYS76 2.3 0.0 1.0 SG A:CYS67 2.3 0.0 1.0 SG A:CYS112 2.3 0.0 1.0 CE1 A:HIS115 2.5 0.0 1.0 HE1 A:HIS115 2.6 0.0 1.0 CG A:HIS115 3.0 0.0 1.0 HB2 A:CYS76 3.1 0.0 1.0 HB2 A:CYS67 3.1 0.0 1.0 CB A:CYS67 3.2 0.0 1.0 HB2 A:HIS115 3.3 0.0 1.0 CB A:CYS76 3.3 0.0 1.0 HD11 A:LEU69 3.3 0.0 1.0 HB2 A:LEU69 3.4 0.0 1.0 HB3 A:CYS67 3.4 0.0 1.0 H A:CYS112 3.5 0.0 1.0 NE2 A:HIS115 3.6 0.0 1.0 HB3 A:CYS76 3.7 0.0 1.0 CB A:HIS115 3.7 0.0 1.0 H A:HIS115 3.8 0.0 1.0 CB A:CYS112 3.8 0.0 1.0 CD2 A:HIS115 3.8 0.0 1.0 HB3 A:CYS112 3.9 0.0 1.0 HB3 A:TYR114 4.2 0.0 1.0 HD2 A:TYR114 4.3 0.0 1.0 HE2 A:HIS115 4.3 0.0 1.0 N A:CYS112 4.3 0.0 1.0 CD1 A:LEU69 4.4 0.0 1.0 CB A:LEU69 4.4 0.0 1.0 HB3 A:HIS115 4.5 0.0 1.0 HB A:ILE111 4.5 0.0 1.0 H A:LEU69 4.5 0.0 1.0 HG A:LEU69 4.5 0.0 1.0 HB3 A:ARG78 4.5 0.0 1.0 N A:HIS115 4.5 0.0 1.0 HB2 A:CYS112 4.6 0.0 1.0 CA A:CYS76 4.6 0.0 1.0 HA A:CYS76 4.6 0.0 1.0 CA A:CYS67 4.6 0.0 1.0 CA A:CYS112 4.7 0.0 1.0 CG A:LEU69 4.7 0.0 1.0 CA A:HIS115 4.8 0.0 1.0 HD2 A:HIS115 4.8 0.0 1.0 HA A:CYS67 4.9 0.0 1.0 O A:LEU69 4.9 0.0 1.0 HD13 A:LEU69 4.9 0.0 1.0 HD12 A:LEU69 5.0 0.0 1.0

Y.He, R.Imhoff, A.Sahu, I.Radhakrishnan. Solution Structure of A Novel Zinc Finger Motif in the SAP30 Polypeptide of the SIN3 Corepressor Complex and Its Potential Role in Nucleic Acid Recognition Nucleic Acids Res. V. 37 2142 2009.
ISSN: ISSN 0305-1048
PubMed: 19223330
DOI: 10.1093/NAR/GKP051