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Zinc in PDB 2kae: Data-Driven Model of MED1:Dna Complex

Zinc Binding Sites:

The binding sites of Zinc atom in the Data-Driven Model of MED1:Dna Complex (pdb code 2kae). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Data-Driven Model of MED1:Dna Complex, PDB code: 2kae:

Zinc binding site 1 out of 1 in 2kae

Go back to Zinc Binding Sites List in 2kae
Zinc binding site 1 out of 1 in the Data-Driven Model of MED1:Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Data-Driven Model of MED1:Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn175

b:10.0
occ:1.00
SG A:CYS136 2.2 10.0 1.0
SG A:CYS117 2.2 10.0 1.0
SG A:CYS139 2.2 10.0 1.0
SG A:CYS114 2.4 10.0 1.0
HB2 A:ASN116 2.9 10.0 1.0
HB3 A:CYS136 3.0 10.0 1.0
HB2 A:CYS117 3.0 10.0 1.0
H A:CYS117 3.0 10.0 1.0
HB2 A:CYS139 3.0 10.0 1.0
HD21 A:ASN116 3.1 10.0 1.0
H A:CYS139 3.1 10.0 1.0
CB A:CYS136 3.2 10.0 1.0
CB A:CYS117 3.2 10.0 1.0
CB A:CYS139 3.2 10.0 1.0
N A:CYS117 3.6 10.0 1.0
HB2 A:CYS114 3.6 10.0 1.0
CB A:CYS114 3.6 10.0 1.0
HG23 A:ILE134 3.7 10.0 1.0
HB2 A:CYS136 3.8 10.0 1.0
HB3 A:CYS114 3.8 10.0 1.0
H A:CYS136 3.8 10.0 1.0
N A:CYS139 3.9 10.0 1.0
ND2 A:ASN116 3.9 10.0 1.0
HG21 A:ILE134 4.0 10.0 1.0
CB A:ASN116 4.0 10.0 1.0
CA A:CYS117 4.0 10.0 1.0
HB2 A:ALA138 4.0 10.0 1.0
HB3 A:CYS117 4.0 10.0 1.0
HB3 A:CYS139 4.1 10.0 1.0
CA A:CYS139 4.1 10.0 1.0
CG2 A:ILE134 4.3 10.0 1.0
H A:ASN116 4.4 10.0 1.0
CA A:CYS136 4.4 10.0 1.0
C A:ASN116 4.4 10.0 1.0
CG A:ASN116 4.4 10.0 1.0
H A:SER115 4.5 10.0 1.0
HA A:CYS117 4.5 10.0 1.0
N A:CYS136 4.5 10.0 1.0
HA A:CYS139 4.5 10.0 1.0
CA A:ASN116 4.6 10.0 1.0
HD22 A:ASN116 4.6 10.0 1.0
H A:ALA138 4.6 10.0 1.0
H A:SER118 4.6 10.0 1.0
HB3 A:ASN116 4.7 10.0 1.0
N A:ASN116 4.7 10.0 1.0
HG22 A:ILE134 4.8 10.0 1.0
HE22 A:GLN135 4.9 10.0 1.0
HE21 A:GLN135 4.9 10.0 1.0
HA A:ILE134 4.9 10.0 1.0
C A:CYS136 4.9 10.0 1.0
CA A:CYS114 5.0 10.0 1.0
C A:ALA138 5.0 10.0 1.0

Reference:

J.A.Lowry, R.Gamsjaeger, S.Y.Thong, W.Hung, A.H.Kwan, G.Broitman-Maduro, J.M.Matthews, M.Maduro, J.P.Mackay. Structural Analysis of Med-1 Reveals Unexpected Diversity in the Mechanism of Dna Recognition By Gata-Type Zinc Finger Domains. J.Biol.Chem. V. 284 5827 2009.
ISSN: ISSN 0021-9258
PubMed: 19095651
DOI: 10.1074/JBC.M808712200
Page generated: Wed Dec 16 03:34:02 2020

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