Zinc in PDB 2hz8: Qm/Mm Structure Refined From uc(Nmr)-Structure of A Single Chain Diiron Protein

The binding sites of Zinc atom in the Qm/Mm Structure Refined From uc(Nmr)-Structure of A Single Chain Diiron Protein (pdb code 2hz8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Qm/Mm Structure Refined From uc(Nmr)-Structure of A Single Chain Diiron Protein, PDB code: 2hz8:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Qm/Mm Structure Refined From uc(Nmr)-Structure of A Single Chain Diiron Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Qm/Mm Structure Refined From uc(Nmr)-Structure of A Single Chain Diiron Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn116 b:1.0 occ:1.00 OE1 A:GLU44 2.0 1.0 1.0 ND1 A:HIS77 2.0 1.0 1.0 OE2 A:GLU104 2.1 1.0 1.0 OE1 A:GLU74 2.1 1.0 1.0 CD A:GLU44 2.7 1.0 1.0 OE2 A:GLU44 2.7 1.0 1.0 CE1 A:HIS77 2.9 1.0 1.0 CD A:GLU104 3.1 1.0 1.0 HE1 A:HIS77 3.1 1.0 1.0 CG A:HIS77 3.2 1.0 1.0 CD A:GLU74 3.2 1.0 1.0 HB2 A:HIS77 3.2 1.0 1.0 HA A:GLU74 3.2 0.0 1.0 OE1 A:GLU104 3.5 1.0 1.0 HG23 A:ILE100 3.5 0.0 1.0 CB A:HIS77 3.6 1.0 1.0 HB3 A:HIS77 3.6 1.0 1.0 H1 A:HOH118 3.6 1.0 1.0 HE1 A:HIS107 3.7 1.0 1.0 OE2 A:GLU74 3.8 1.0 1.0 HG22 A:ILE100 3.9 0.0 1.0 H2 A:HOH118 3.9 1.0 1.0 NE2 A:HIS77 4.1 1.0 1.0 CG2 A:ILE100 4.1 0.0 1.0 CG A:GLU44 4.2 1.0 1.0 O A:HOH118 4.2 1.0 1.0 ZN A:ZN117 4.2 1.0 1.0 HG21 A:ILE100 4.2 0.0 1.0 CA A:GLU74 4.2 0.0 1.0 CD2 A:HIS77 4.2 1.0 1.0 CG A:GLU74 4.3 1.0 1.0 CG A:GLU104 4.4 1.0 1.0 HG2 A:GLU104 4.4 1.0 1.0 HG3 A:GLU44 4.4 1.0 1.0 HB3 A:GLU74 4.4 1.0 1.0 HH A:TYR18 4.5 0.0 1.0 HA A:GLU44 4.5 0.0 1.0 CB A:GLU74 4.6 1.0 1.0 CE1 A:HIS107 4.6 1.0 1.0 HG3 A:GLU104 4.7 1.0 1.0 O A:ASP73 4.7 0.0 1.0 HE2 A:TYR18 4.7 0.0 1.0 N A:GLU74 4.7 0.0 1.0 HB3 A:GLU44 4.7 1.0 1.0 HB3 A:ASP73 4.7 0.0 1.0 HG2 A:GLU44 4.8 1.0 1.0 ND1 A:HIS107 4.9 1.0 1.0 C A:ASP73 4.9 0.0 1.0 CB A:GLU44 4.9 1.0 1.0 HG3 A:GLU74 5.0 1.0 1.0

Zinc binding site 2 out of 2 in the Qm/Mm Structure Refined From uc(Nmr)-Structure of A Single Chain Diiron Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Qm/Mm Structure Refined From uc(Nmr)-Structure of A Single Chain Diiron Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn117 b:1.0 occ:1.00 OE1 A:GLU11 2.0 1.0 1.0 OE2 A:GLU74 2.0 1.0 1.0 OE1 A:GLU104 2.1 1.0 1.0 ND1 A:HIS107 2.1 1.0 1.0 CD A:GLU11 2.9 1.0 1.0 CD A:GLU74 3.0 1.0 1.0 CE1 A:HIS107 3.1 1.0 1.0 CD A:GLU104 3.1 1.0 1.0 CG A:HIS107 3.1 1.0 1.0 OE2 A:GLU11 3.2 1.0 1.0 HB2 A:HIS107 3.2 1.0 1.0 HE1 A:HIS107 3.3 1.0 1.0 HA A:GLU104 3.3 0.0 1.0 OE1 A:GLU74 3.3 1.0 1.0 H1 A:HOH118 3.3 1.0 1.0 HB3 A:HIS107 3.4 1.0 1.0 HG21 A:ILE70 3.4 0.0 1.0 CB A:HIS107 3.5 1.0 1.0 OE2 A:GLU104 3.6 1.0 1.0 HG23 A:ILE70 3.8 0.0 1.0 CG2 A:ILE70 4.0 0.0 1.0 O A:HOH118 4.1 1.0 1.0 H1 A:HOH119 4.1 1.0 1.0 HB3 A:GLU104 4.2 1.0 1.0 HG22 A:ILE70 4.2 0.0 1.0 ZN A:ZN116 4.2 1.0 1.0 NE2 A:HIS107 4.2 1.0 1.0 H2 A:HOH119 4.3 1.0 1.0 CD2 A:HIS107 4.3 1.0 1.0 CG A:GLU104 4.3 1.0 1.0 CG A:GLU11 4.3 1.0 1.0 CA A:GLU104 4.3 0.0 1.0 CG A:GLU74 4.3 1.0 1.0 HG3 A:GLU74 4.4 1.0 1.0 H2 A:HOH118 4.4 1.0 1.0 HG3 A:GLU11 4.4 1.0 1.0 HG2 A:GLU74 4.5 1.0 1.0 HH A:TYR51 4.5 0.0 1.0 CB A:GLU104 4.5 1.0 1.0 HA A:GLU11 4.5 0.0 1.0 O A:HOH119 4.7 1.0 1.0 HB3 A:GLU11 4.8 1.0 1.0 HG3 A:GLU104 4.8 1.0 1.0 HE1 A:HIS77 4.9 1.0 1.0 N A:GLU104 5.0 0.0 1.0

J.R.Calhoun, W.Liu, K.Spiegel, M.Dal Peraro, M.L.Klein, K.G.Valentine, A.J.Wand, W.F.Degrado. Solution uc(Nmr) Structure of A Designed Metalloprotein and Complementary Molecular Dynamics Refinement. Structure V. 16 210 2008.
ISSN: ISSN 0969-2126
PubMed: 18275812
DOI: 10.1016/J.STR.2007.11.011