Atomistry » Zinc » PDB 2hpy-2i7v » 2huc
Atomistry »
  Zinc »
    PDB 2hpy-2i7v »
      2huc »

Zinc in PDB 2huc: Structural Studies Examining the Substrate Specificity Profiles of Pc- Plcbc Protein Variants

Enzymatic activity of Structural Studies Examining the Substrate Specificity Profiles of Pc- Plcbc Protein Variants

All present enzymatic activity of Structural Studies Examining the Substrate Specificity Profiles of Pc- Plcbc Protein Variants:
3.1.4.3;

Protein crystallography data

The structure of Structural Studies Examining the Substrate Specificity Profiles of Pc- Plcbc Protein Variants, PDB code: 2huc was solved by A.P.Benfield, S.F.Martin, N.M.Antikainen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.90
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 89.973, 89.973, 71.957, 90.00, 90.00, 90.00
R / Rfree (%) 18.7 / 20.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Structural Studies Examining the Substrate Specificity Profiles of Pc- Plcbc Protein Variants (pdb code 2huc). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Structural Studies Examining the Substrate Specificity Profiles of Pc- Plcbc Protein Variants, PDB code: 2huc:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 2huc

Go back to Zinc Binding Sites List in 2huc
Zinc binding site 1 out of 3 in the Structural Studies Examining the Substrate Specificity Profiles of Pc- Plcbc Protein Variants


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Studies Examining the Substrate Specificity Profiles of Pc- Plcbc Protein Variants within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn246

b:15.4
occ:1.00
O A:HOH249 2.1 12.6 1.0
ND1 A:HIS69 2.1 12.8 1.0
OD2 A:ASP122 2.2 11.9 1.0
NE2 A:HIS118 2.2 9.6 1.0
OD1 A:ASP55 2.4 10.8 1.0
CE1 A:HIS69 2.9 13.3 1.0
CG A:ASP122 3.2 12.8 1.0
CE1 A:HIS118 3.2 11.1 1.0
CD2 A:HIS118 3.2 11.7 1.0
CG A:ASP55 3.2 13.8 1.0
CG A:HIS69 3.3 12.2 1.0
ZN A:ZN248 3.3 15.5 1.0
OD2 A:ASP55 3.4 12.9 1.0
OD1 A:ASP122 3.4 11.4 1.0
O A:HOH442 3.6 50.9 1.0
CB A:HIS69 3.8 12.1 1.0
NE2 A:HIS14 4.0 10.9 1.0
NE2 A:HIS69 4.1 12.0 1.0
ND1 A:HIS118 4.3 11.0 1.0
CD2 A:HIS69 4.3 11.0 1.0
CG A:HIS118 4.3 11.6 1.0
O A:HOH250 4.4 18.2 1.0
CB A:ASP122 4.5 11.3 1.0
CE1 A:HIS14 4.6 10.9 1.0
CB A:ASP55 4.7 13.0 1.0
CE1 A:HIS128 4.7 13.9 1.0
CD2 A:HIS14 4.8 10.4 1.0
O A:TRP1 4.9 11.9 1.0
CA A:HIS69 5.0 11.6 1.0

Zinc binding site 2 out of 3 in 2huc

Go back to Zinc Binding Sites List in 2huc
Zinc binding site 2 out of 3 in the Structural Studies Examining the Substrate Specificity Profiles of Pc- Plcbc Protein Variants


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structural Studies Examining the Substrate Specificity Profiles of Pc- Plcbc Protein Variants within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn247

b:18.8
occ:1.00
NE2 A:HIS128 2.2 11.8 1.0
NE2 A:HIS142 2.2 15.3 1.0
O A:HOH250 2.3 18.2 1.0
OE2 A:GLU146 2.4 12.0 1.0
O A:HOH251 2.4 23.9 1.0
OE1 A:GLU146 2.5 16.4 1.0
CD A:GLU146 2.7 15.6 1.0
CE1 A:HIS128 3.1 13.9 1.0
CE1 A:HIS142 3.2 15.2 1.0
CD2 A:HIS128 3.2 13.1 1.0
CD2 A:HIS142 3.2 15.0 1.0
O A:HOH442 4.1 50.9 1.0
N A:TRP1 4.1 10.3 1.0
CG A:GLU146 4.1 14.7 1.0
ND1 A:HIS128 4.2 12.8 1.0
O A:HOH338 4.2 27.1 1.0
ND1 A:HIS142 4.3 15.1 1.0
CG A:HIS128 4.3 13.2 1.0
CG A:HIS142 4.4 16.1 1.0
O A:HOH259 4.5 23.8 1.0
OE1 A:GLN125 4.5 16.9 1.0
O A:HOH249 4.5 12.6 1.0
ZN A:ZN248 4.7 15.5 1.0
O A:HOH256 4.9 35.4 1.0
CA A:TRP1 4.9 12.4 1.0
O A:TRP1 5.0 11.9 1.0
O A:HOH254 5.0 34.4 1.0

Zinc binding site 3 out of 3 in 2huc

Go back to Zinc Binding Sites List in 2huc
Zinc binding site 3 out of 3 in the Structural Studies Examining the Substrate Specificity Profiles of Pc- Plcbc Protein Variants


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structural Studies Examining the Substrate Specificity Profiles of Pc- Plcbc Protein Variants within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn248

b:15.5
occ:1.00
O A:HOH249 2.1 12.6 1.0
NE2 A:HIS14 2.1 10.9 1.0
OD1 A:ASP122 2.2 11.4 1.0
N A:TRP1 2.2 10.3 1.0
O A:TRP1 2.3 11.9 1.0
C A:TRP1 3.0 12.4 1.0
CD2 A:HIS14 3.0 10.4 1.0
O A:HOH250 3.0 18.2 1.0
CA A:TRP1 3.0 12.4 1.0
CG A:ASP122 3.2 12.8 1.0
CE1 A:HIS14 3.2 10.9 1.0
ZN A:ZN246 3.3 15.4 1.0
OD2 A:ASP122 3.5 11.9 1.0
CB A:TRP1 3.7 11.0 1.0
OD2 A:ASP55 4.0 12.9 1.0
NE2 A:HIS118 4.0 9.6 1.0
CG A:HIS14 4.2 10.1 1.0
ND1 A:HIS14 4.2 10.9 1.0
N A:SER2 4.3 13.4 1.0
CE1 A:HIS118 4.3 11.1 1.0
CG A:TRP1 4.4 14.1 1.0
CD1 A:TRP1 4.5 12.4 1.0
CE1 A:HIS128 4.5 13.9 1.0
CB A:ASP122 4.5 11.3 1.0
NE2 A:HIS128 4.6 11.8 1.0
OE2 A:GLU146 4.6 12.0 1.0
ZN A:ZN247 4.7 18.8 1.0
OD1 A:ASP55 4.7 10.8 1.0
CA A:ASP122 4.8 10.5 1.0
CG A:ASP55 4.8 13.8 1.0
O A:HOH442 4.8 50.9 1.0
O A:HOH338 4.9 27.1 1.0
CD2 A:HIS118 4.9 11.7 1.0
O A:SER2 5.0 10.7 1.0
CA A:SER2 5.0 13.4 1.0

Reference:

A.P.Benfield, N.M.Goodey, L.T.Phillips, S.F.Martin. Structural Studies Examining the Substrate Specificity Profiles of Pc-Plc(Bc) Protein Variants. Arch.Biochem.Biophys. V. 460 41 2007.
ISSN: ISSN 0003-9861
PubMed: 17324372
DOI: 10.1016/J.ABB.2007.01.023
Page generated: Wed Dec 16 03:30:24 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy