Zinc in PDB 2gvm: Crystal Structure of Hydrophobin Hfbi with Detergent

The structure of Crystal Structure of Hydrophobin Hfbi with Detergent, PDB code: 2gvm was solved by J.M.Hakanpaa, J.Rouvinen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.30
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	91.900, 121.600, 121.200, 90.00, 90.00, 90.00
R / Rfree (%)	23.3 / 24.7

The binding sites of Zinc atom in the Crystal Structure of Hydrophobin Hfbi with Detergent (pdb code 2gvm). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Hydrophobin Hfbi with Detergent, PDB code: 2gvm:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Hydrophobin Hfbi with Detergent


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Hydrophobin Hfbi with Detergent within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:35.8 occ:1.00 OD1 A:ASP43 2.0 35.5 1.0 O A:HOH305 2.3 26.6 1.0 OD2 A:ASP43 2.5 38.5 1.0 CG A:ASP43 2.5 36.0 1.0 O A:HOH307 3.6 46.7 1.0 OE1 A:GLN36 3.8 32.2 1.0 CB A:ASP43 4.0 33.6 1.0 O A:ASN37 4.1 32.6 1.0 O A:HOH335 4.3 53.2 1.0 CG2 A:VAL47 4.6 30.7 1.0 CD2 A:TYR39 4.7 24.3 1.0 CE2 A:TYR39 4.9 23.9 1.0 CD A:GLN36 4.9 32.3 1.0 CA A:ASP43 5.0 33.1 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Hydrophobin Hfbi with Detergent


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Hydrophobin Hfbi with Detergent within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn202 b:37.5 occ:1.00 O B:HOH328 2.1 33.1 1.0 OD1 B:ASP40 2.2 36.5 1.0 OD2 B:ASP43 2.2 44.1 1.0 CG B:ASP43 2.7 42.0 1.0 OD1 B:ASP43 2.8 44.2 1.0 OD2 B:ASP40 2.8 36.5 1.0 CG B:ASP40 2.8 37.0 1.0 CB B:ASP43 4.1 39.5 1.0 N B:ASP43 4.2 35.3 1.0 CB B:ASP40 4.3 38.1 1.0 CA B:ASP43 4.6 37.3 1.0 CB B:THR42 4.6 36.0 1.0 N B:ASP40 4.9 37.3 1.0 CG2 B:THR42 4.9 32.1 1.0

J.M.Hakanpaa, G.R.Szilvay, H.Kaljunen, M.Maksimainen, M.Linder, J.Rouvinen. Two Crystal Structures of Trichoderma Reesei Hydrophobin Hfbi--the Structure of A Protein Amphiphile with and Without Detergent Interaction. Protein Sci. V. 15 2129 2006.
ISSN: ISSN 0961-8368
PubMed: 16882996
DOI: 10.1110/PS.062326706