Zinc in PDB 2gu1: Crystal Structure of A Zinc Containing Peptidase From Vibrio Cholerae

The structure of Crystal Structure of A Zinc Containing Peptidase From Vibrio Cholerae, PDB code: 2gu1 was solved by R.Sugadev, D.Kumaran, S.Swaminathan, S.K.Burley, New York Sgxresearch Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.24 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	49.382, 85.396, 53.404, 90.00, 112.96, 90.00
R / Rfree (%)	23 / 26.4

The structure of Crystal Structure of A Zinc Containing Peptidase From Vibrio Cholerae also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Zinc atom in the Crystal Structure of A Zinc Containing Peptidase From Vibrio Cholerae (pdb code 2gu1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of A Zinc Containing Peptidase From Vibrio Cholerae, PDB code: 2gu1:

Zinc binding site 1 out of 1 in the Crystal Structure of A Zinc Containing Peptidase From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Zinc Containing Peptidase From Vibrio Cholerae within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn362 b:26.6 occ:1.00 NE2 A:HIS232 2.0 25.2 1.0 OD1 A:ASP236 2.0 23.8 1.0 ND1 A:HIS313 2.0 24.4 1.0 CG A:ASP236 2.7 25.1 1.0 OD2 A:ASP236 2.7 22.6 1.0 CE1 A:HIS313 2.9 21.7 1.0 CD2 A:HIS232 3.0 26.7 1.0 CE1 A:HIS232 3.0 27.9 1.0 CG A:HIS313 3.2 23.5 1.0 CB A:HIS313 3.6 22.9 1.0 O A:HOH372 4.0 16.7 1.0 NE2 A:HIS311 4.1 28.7 1.0 NE2 A:HIS313 4.1 23.1 1.0 ND1 A:HIS232 4.1 25.5 1.0 CG A:HIS232 4.1 28.6 1.0 CB A:ASP236 4.2 25.9 1.0 CD2 A:HIS313 4.2 23.5 1.0 CA A:HIS313 4.2 21.1 1.0 CD2 A:HIS311 4.4 27.6 1.0 O A:HOH438 4.6 41.7 1.0 O A:HOH413 4.6 31.5 1.0 N A:ASP236 4.7 23.9 1.0 CA A:ASP236 4.7 25.6 1.0 C A:THR235 4.9 25.6 1.0 O A:GLY234 4.9 25.3 1.0 C A:GLY234 4.9 25.9 1.0

S.Ragumani, D.Kumaran, S.K.Burley, S.Swaminathan. Crystal Structure of A Putative Lysostaphin Peptidase From Vibrio Cholerae. Proteins V. 72 1096 2008.
ISSN: ISSN 0887-3585
PubMed: 18498110
DOI: 10.1002/PROT.22095