Zinc in PDB 2g84: Cytidine and Deoxycytidylate Deaminase Zinc-Binding Region From Nitrosomonas Europaea.

The structure of Cytidine and Deoxycytidylate Deaminase Zinc-Binding Region From Nitrosomonas Europaea., PDB code: 2g84 was solved by J.Osipiuk, T.Skarina, O.Onopriyenko, A.Savchenko, A.Edwards, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.90 / 1.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	38.354, 73.789, 110.370, 90.00, 90.00, 90.00
R / Rfree (%)	12.8 / 16

The structure of Cytidine and Deoxycytidylate Deaminase Zinc-Binding Region From Nitrosomonas Europaea. also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Zinc atom in the Cytidine and Deoxycytidylate Deaminase Zinc-Binding Region From Nitrosomonas Europaea. (pdb code 2g84). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cytidine and Deoxycytidylate Deaminase Zinc-Binding Region From Nitrosomonas Europaea., PDB code: 2g84:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cytidine and Deoxycytidylate Deaminase Zinc-Binding Region From Nitrosomonas Europaea.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cytidine and Deoxycytidylate Deaminase Zinc-Binding Region From Nitrosomonas Europaea. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn506 b:9.7 occ:1.00 ND1 A:HIS77 2.1 9.2 1.0 O A:HOH714 2.1 10.7 1.0 SG A:CYS115 2.3 9.1 1.0 SG A:CYS112 2.3 9.9 1.0 CE1 A:HIS77 3.0 10.3 1.0 CG A:HIS77 3.1 7.8 1.0 CB A:CYS115 3.2 8.0 1.0 CB A:CYS112 3.5 10.4 1.0 CB A:HIS77 3.5 8.3 1.0 O2 A:EDO501 3.9 21.2 1.0 N A:CYS115 3.9 8.2 1.0 N A:CYS112 3.9 9.1 1.0 OE2 A:GLU79 3.9 12.3 1.0 CE A:MET114 4.0 11.7 1.0 OE1 A:GLU79 4.0 10.8 1.0 NE2 A:HIS77 4.1 11.4 1.0 CA A:CYS115 4.1 8.1 1.0 CD A:GLU79 4.2 10.6 1.0 CA A:CYS112 4.2 9.7 1.0 CD2 A:HIS77 4.2 9.2 1.0 O A:HOH545 4.6 19.0 1.0 C A:CYS112 4.7 10.0 1.0 CB A:MET114 4.7 8.8 1.0 O A:CYS112 4.7 9.8 1.0 O A:HOH617 4.8 29.8 1.0 C A:MET114 4.9 8.2 1.0 NE1 B:TRP121 5.0 12.0 1.0 O A:HOH511 5.0 10.6 0.6

Zinc binding site 2 out of 2 in the Cytidine and Deoxycytidylate Deaminase Zinc-Binding Region From Nitrosomonas Europaea.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cytidine and Deoxycytidylate Deaminase Zinc-Binding Region From Nitrosomonas Europaea. within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn507 b:9.6 occ:1.00 ND1 B:HIS77 2.0 8.7 1.0 O B:HOH703 2.1 9.9 1.0 SG B:CYS115 2.3 9.5 1.0 SG B:CYS112 2.3 9.4 1.0 CE1 B:HIS77 2.9 9.8 1.0 CG B:HIS77 3.1 7.2 1.0 CB B:CYS115 3.2 9.0 1.0 CB B:CYS112 3.5 8.7 1.0 CB B:HIS77 3.5 8.5 1.0 O2 B:EDO503 3.8 21.5 1.0 OE2 B:GLU79 3.9 11.9 1.0 N B:CYS112 3.9 9.3 1.0 N B:CYS115 3.9 9.0 1.0 CE B:MET114 4.0 10.6 1.0 OE1 B:GLU79 4.1 10.4 1.0 NE2 B:HIS77 4.1 10.9 1.0 CA B:CYS115 4.1 8.1 1.0 CA B:CYS112 4.2 8.2 1.0 CD2 B:HIS77 4.2 10.4 1.0 CD B:GLU79 4.2 9.3 1.0 O B:HOH524 4.7 19.9 1.0 C B:CYS112 4.7 8.5 1.0 O B:HOH630 4.7 32.8 1.0 O B:CYS112 4.7 9.2 1.0 CB B:MET114 4.7 8.2 1.0 C B:MET114 5.0 8.7 1.0

J.Osipiuk, T.Skarina, O.Onopriyenko, A.Savchenko, A.Edwards, A.Joachimiak. X-Ray Crystal Structure of Cytidine and Deoxycytidylate Deaminase Zinc-Binding Region From Nitrosomonas Europaea. To Be Published.