Zinc in PDB 2fnf: C1 Domain of NORE1
Zinc Binding Sites:
The binding sites of Zinc atom in the C1 Domain of NORE1
(pdb code 2fnf). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
C1 Domain of NORE1, PDB code: 2fnf:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 2fnf
Go back to
Zinc Binding Sites List in 2fnf
Zinc binding site 1 out
of 2 in the C1 Domain of NORE1
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of C1 Domain of NORE1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Zn1
b:0.0
occ:1.00
|
SG
|
X:CYS135
|
2.1
|
0.0
|
1.0
|
SG
|
X:CYS157
|
2.1
|
0.0
|
1.0
|
SG
|
X:CYS132
|
2.1
|
0.0
|
1.0
|
ND1
|
X:HIS154
|
2.2
|
0.0
|
1.0
|
H
|
X:HIS154
|
2.9
|
0.0
|
1.0
|
HB2
|
X:CYS135
|
3.0
|
0.0
|
1.0
|
CB
|
X:CYS157
|
3.1
|
0.0
|
1.0
|
CE1
|
X:HIS154
|
3.1
|
0.0
|
1.0
|
HB2
|
X:CYS157
|
3.1
|
0.0
|
1.0
|
CB
|
X:CYS132
|
3.1
|
0.0
|
1.0
|
CB
|
X:CYS135
|
3.2
|
0.0
|
1.0
|
HB3
|
X:CYS132
|
3.2
|
0.0
|
1.0
|
HE1
|
X:HIS154
|
3.2
|
0.0
|
1.0
|
HB3
|
X:CYS157
|
3.2
|
0.0
|
1.0
|
HB2
|
X:CYS132
|
3.3
|
0.0
|
1.0
|
CG
|
X:HIS154
|
3.3
|
0.0
|
1.0
|
HB2
|
X:HIS154
|
3.4
|
0.0
|
1.0
|
H
|
X:CYS135
|
3.6
|
0.0
|
1.0
|
HD23
|
X:LEU134
|
3.6
|
0.0
|
1.0
|
HH21
|
X:ARG137
|
3.8
|
0.0
|
1.0
|
N
|
X:HIS154
|
3.8
|
0.0
|
1.0
|
CB
|
X:HIS154
|
3.8
|
0.0
|
1.0
|
HB3
|
X:CYS135
|
3.9
|
0.0
|
1.0
|
HG
|
X:LEU134
|
3.9
|
0.0
|
1.0
|
HB2
|
X:CYS153
|
4.0
|
0.0
|
1.0
|
N
|
X:CYS135
|
4.1
|
0.0
|
1.0
|
HB3
|
X:LEU134
|
4.1
|
0.0
|
1.0
|
CA
|
X:CYS135
|
4.2
|
0.0
|
1.0
|
NE2
|
X:HIS154
|
4.3
|
0.0
|
1.0
|
HA
|
X:CYS153
|
4.3
|
0.0
|
1.0
|
CA
|
X:HIS154
|
4.4
|
0.0
|
1.0
|
CD2
|
X:HIS154
|
4.4
|
0.0
|
1.0
|
CD2
|
X:LEU134
|
4.4
|
0.0
|
1.0
|
HE
|
X:ARG137
|
4.4
|
0.0
|
1.0
|
CA
|
X:CYS157
|
4.5
|
0.0
|
1.0
|
CA
|
X:CYS132
|
4.6
|
0.0
|
1.0
|
H
|
X:CYS157
|
4.6
|
0.0
|
1.0
|
CG
|
X:LEU134
|
4.6
|
0.0
|
1.0
|
HD22
|
X:LEU134
|
4.6
|
0.0
|
1.0
|
HA
|
X:CYS135
|
4.6
|
0.0
|
1.0
|
NH2
|
X:ARG137
|
4.6
|
0.0
|
1.0
|
HB2
|
X:ARG137
|
4.7
|
0.0
|
1.0
|
HA
|
X:CYS157
|
4.8
|
0.0
|
1.0
|
HB3
|
X:HIS154
|
4.8
|
0.0
|
1.0
|
C
|
X:CYS153
|
4.8
|
0.0
|
1.0
|
HG13
|
X:VAL139
|
4.8
|
0.0
|
1.0
|
CB
|
X:CYS153
|
4.9
|
0.0
|
1.0
|
CB
|
X:LEU134
|
4.9
|
0.0
|
1.0
|
CA
|
X:CYS153
|
4.9
|
0.0
|
1.0
|
HA
|
X:CYS132
|
5.0
|
0.0
|
1.0
|
N
|
X:CYS157
|
5.0
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 2 in 2fnf
Go back to
Zinc Binding Sites List in 2fnf
Zinc binding site 2 out
of 2 in the C1 Domain of NORE1
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of C1 Domain of NORE1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
X:Zn2
b:0.0
occ:1.00
|
SG
|
X:CYS165
|
2.1
|
0.0
|
1.0
|
ND1
|
X:HIS118
|
2.1
|
0.0
|
1.0
|
SG
|
X:CYS149
|
2.2
|
0.0
|
1.0
|
SG
|
X:CYS146
|
2.3
|
0.0
|
1.0
|
HA
|
X:CYS165
|
2.3
|
0.0
|
1.0
|
HB2
|
X:ASN148
|
2.7
|
0.0
|
1.0
|
CB
|
X:CYS165
|
2.8
|
0.0
|
1.0
|
CE1
|
X:HIS118
|
2.9
|
0.0
|
1.0
|
HA
|
X:HIS118
|
2.9
|
0.0
|
1.0
|
HE1
|
X:HIS118
|
3.0
|
0.0
|
1.0
|
CA
|
X:CYS165
|
3.0
|
0.0
|
1.0
|
HB3
|
X:CYS165
|
3.2
|
0.0
|
1.0
|
CG
|
X:HIS118
|
3.3
|
0.0
|
1.0
|
N
|
X:CYS165
|
3.5
|
0.0
|
1.0
|
H
|
X:CYS165
|
3.5
|
0.0
|
1.0
|
H
|
X:LYS150
|
3.7
|
0.0
|
1.0
|
CB
|
X:ASN148
|
3.7
|
0.0
|
1.0
|
CB
|
X:CYS146
|
3.8
|
0.0
|
1.0
|
CB
|
X:CYS149
|
3.8
|
0.0
|
1.0
|
CA
|
X:HIS118
|
3.8
|
0.0
|
1.0
|
HB2
|
X:CYS165
|
3.8
|
0.0
|
1.0
|
H
|
X:ARG166
|
3.9
|
0.0
|
1.0
|
HB3
|
X:CYS146
|
3.9
|
0.0
|
1.0
|
HB3
|
X:ASN148
|
3.9
|
0.0
|
1.0
|
CB
|
X:HIS118
|
3.9
|
0.0
|
1.0
|
H
|
X:CYS149
|
3.9
|
0.0
|
1.0
|
HB3
|
X:CYS149
|
4.0
|
0.0
|
1.0
|
HB3
|
X:HIS118
|
4.0
|
0.0
|
1.0
|
N
|
X:CYS149
|
4.1
|
0.0
|
1.0
|
H
|
X:ARG119
|
4.1
|
0.0
|
1.0
|
HD21
|
X:ASN148
|
4.1
|
0.0
|
1.0
|
NE2
|
X:HIS118
|
4.1
|
0.0
|
1.0
|
HG3
|
X:LYS150
|
4.2
|
0.0
|
1.0
|
HB2
|
X:CYS146
|
4.2
|
0.0
|
1.0
|
C
|
X:CYS165
|
4.3
|
0.0
|
1.0
|
C
|
X:ASN148
|
4.3
|
0.0
|
1.0
|
H
|
X:ASN148
|
4.3
|
0.0
|
1.0
|
CD2
|
X:HIS118
|
4.3
|
0.0
|
1.0
|
C
|
X:ASP164
|
4.4
|
0.0
|
1.0
|
CA
|
X:ASN148
|
4.4
|
0.0
|
1.0
|
N
|
X:HIS118
|
4.4
|
0.0
|
1.0
|
N
|
X:ARG166
|
4.5
|
0.0
|
1.0
|
HB2
|
X:CYS149
|
4.5
|
0.0
|
1.0
|
CA
|
X:CYS149
|
4.6
|
0.0
|
1.0
|
HB2
|
X:LYS150
|
4.6
|
0.0
|
1.0
|
CG
|
X:ASN148
|
4.7
|
0.0
|
1.0
|
N
|
X:LYS150
|
4.7
|
0.0
|
1.0
|
HD2
|
X:LYS150
|
4.7
|
0.0
|
1.0
|
ND2
|
X:ASN148
|
4.7
|
0.0
|
1.0
|
N
|
X:ASN148
|
4.7
|
0.0
|
1.0
|
O
|
X:CYS146
|
4.7
|
0.0
|
1.0
|
H
|
X:HIS118
|
4.7
|
0.0
|
1.0
|
HG2
|
X:ARG119
|
4.8
|
0.0
|
1.0
|
HA
|
X:ASP164
|
4.8
|
0.0
|
1.0
|
N
|
X:ARG119
|
4.8
|
0.0
|
1.0
|
O
|
X:ASP164
|
4.9
|
0.0
|
1.0
|
C
|
X:HIS118
|
4.9
|
0.0
|
1.0
|
CA
|
X:CYS146
|
4.9
|
0.0
|
1.0
|
HB2
|
X:HIS118
|
4.9
|
0.0
|
1.0
|
O
|
X:ASN148
|
4.9
|
0.0
|
1.0
|
C
|
X:CYS146
|
5.0
|
0.0
|
1.0
|
HE2
|
X:HIS118
|
5.0
|
0.0
|
1.0
|
HE2
|
X:LYS150
|
5.0
|
0.0
|
1.0
|
|
Reference:
E.Harjes,
S.Harjes,
S.Wohlgemuth,
K.H.Muller,
E.Krieger,
C.Herrmann,
P.Bayer.
Gtp-Ras Disrupts the Intramolecular Complex of C1 and Ra Domains of NORE1. Structure V. 14 881 2006.
ISSN: ISSN 0969-2126
PubMed: 16698549
DOI: 10.1016/J.STR.2006.03.008
Page generated: Wed Oct 16 23:49:56 2024
|