Zinc in PDB 2fid: Crystal Structure of A Bovine Rabex-5 Fragment Complexed with Ubiquitin

The structure of Crystal Structure of A Bovine Rabex-5 Fragment Complexed with Ubiquitin, PDB code: 2fid was solved by S.Lee, J.H.Hurley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	71.07 / 2.80
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	81.967, 81.967, 54.443, 90.00, 90.00, 120.00
R / Rfree (%)	21.1 / 26.8

The binding sites of Zinc atom in the Crystal Structure of A Bovine Rabex-5 Fragment Complexed with Ubiquitin (pdb code 2fid). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of A Bovine Rabex-5 Fragment Complexed with Ubiquitin, PDB code: 2fid:

Zinc binding site 1 out of 1 in the Crystal Structure of A Bovine Rabex-5 Fragment Complexed with Ubiquitin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Bovine Rabex-5 Fragment Complexed with Ubiquitin within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn901 b:83.7 occ:1.00 SG B:CYS19 2.3 60.2 1.0 SG B:CYS38 2.4 56.1 1.0 SG B:CYS23 2.7 60.3 1.0 SG B:CYS35 2.8 61.7 1.0 CB B:CYS38 3.2 58.0 1.0 CB B:CYS19 3.2 60.1 1.0 CB B:CYS35 3.4 60.5 1.0 CB B:CYS23 3.9 59.5 1.0 N B:CYS35 3.9 60.3 1.0 CA B:CYS35 4.3 60.3 1.0 CA B:CYS38 4.4 58.0 1.0 N B:CYS38 4.4 58.2 1.0 CB B:LYS21 4.5 60.3 1.0 N B:CYS23 4.6 59.6 1.0 CA B:CYS19 4.7 60.2 1.0 CA B:CYS23 4.8 59.6 1.0 CB B:TYR25 4.9 58.4 1.0

S.Lee, Y.C.Tsai, R.Mattera, W.J.Smith, M.S.Kostelansky, A.M.Weissman, J.S.Bonifacino, J.H.Hurley. Structural Basis For Ubiquitin Recognition and Autoubiquitination By Rabex-5 Nat.Struct.Mol.Biol. V. 13 264 2006.
ISSN: ISSN 1545-9993
PubMed: 16462746
DOI: 10.1038/NSMB1064