Atomistry » Zinc » PDB 2f9y-2fnm » 2fge
Atomistry »
  Zinc »
    PDB 2f9y-2fnm »
      2fge »

Zinc in PDB 2fge: Crystal Structure of Presequence Protease Prep From Arabidopsis Thaliana

Protein crystallography data

The structure of Crystal Structure of Presequence Protease Prep From Arabidopsis Thaliana, PDB code: 2fge was solved by T.Eneqvist, K.A.Johnson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 93.66 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 110.834, 114.332, 162.984, 90.00, 90.00, 90.00
R / Rfree (%) 20.6 / 25.6

Other elements in 2fge:

The structure of Crystal Structure of Presequence Protease Prep From Arabidopsis Thaliana also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Presequence Protease Prep From Arabidopsis Thaliana (pdb code 2fge). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Presequence Protease Prep From Arabidopsis Thaliana, PDB code: 2fge:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2fge

Go back to Zinc Binding Sites List in 2fge
Zinc binding site 1 out of 2 in the Crystal Structure of Presequence Protease Prep From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Presequence Protease Prep From Arabidopsis Thaliana within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn996

b:50.0
occ:1.00
NE2 A:HIS81 2.1 32.7 1.0
OE1 A:GLU177 2.2 35.0 1.0
NE2 A:HIS77 2.3 24.7 1.0
OE2 A:GLU177 2.7 38.8 1.0
CD A:GLU177 2.8 35.3 1.0
CE1 A:HIS81 2.9 31.1 1.0
O D:THR4 3.0 79.0 1.0
CD2 A:HIS81 3.2 27.8 1.0
CE1 A:HIS77 3.2 26.4 1.0
CD2 A:HIS77 3.3 24.4 1.0
C D:THR4 4.1 79.0 1.0
ND1 A:HIS81 4.1 33.4 1.0
CG A:HIS81 4.2 30.2 1.0
CG A:GLU177 4.3 35.2 1.0
ND1 A:HIS77 4.3 26.3 1.0
CG A:HIS77 4.4 25.4 1.0
CB D:LEU3 4.6 79.3 1.0
CE1 A:TYR854 4.6 46.2 1.0
N D:THR4 4.6 79.3 1.0
C D:LEU3 4.7 79.4 1.0
OE1 A:GLN80 4.8 36.3 1.0
CG2 A:VAL174 4.8 28.9 1.0
NE2 A:GLN80 4.8 30.9 1.0
CA D:ARG5 4.9 78.8 1.0
N D:ARG5 4.9 78.8 1.0
CB A:GLU177 4.9 33.8 1.0
O D:LEU3 5.0 79.4 1.0
CA D:THR4 5.0 79.2 1.0

Zinc binding site 2 out of 2 in 2fge

Go back to Zinc Binding Sites List in 2fge
Zinc binding site 2 out of 2 in the Crystal Structure of Presequence Protease Prep From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Presequence Protease Prep From Arabidopsis Thaliana within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn996

b:56.2
occ:1.00
NE2 B:HIS81 2.1 36.0 1.0
OE1 B:GLU177 2.2 38.9 1.0
NE2 B:HIS77 2.2 32.4 1.0
O E:THR4 2.6 70.8 1.0
CD B:GLU177 2.9 43.8 1.0
OE2 B:GLU177 2.9 44.7 1.0
CE1 B:HIS81 3.0 37.1 1.0
CE1 B:HIS77 3.1 34.9 1.0
CD2 B:HIS81 3.1 35.2 1.0
CD2 B:HIS77 3.2 32.6 1.0
C E:THR4 3.7 71.0 1.0
ND1 B:HIS81 4.2 36.1 1.0
ND1 B:HIS77 4.2 32.4 1.0
CG B:HIS81 4.2 34.8 1.0
CE2 B:TYR854 4.3 39.8 1.0
CG B:HIS77 4.3 31.4 1.0
CA E:ARG5 4.3 70.9 1.0
CG B:GLU177 4.4 43.2 1.0
N E:ARG5 4.4 70.9 1.0
OH B:TYR854 4.5 41.0 1.0
N E:THR4 4.5 71.5 1.0
NE2 B:GLN80 4.5 37.0 1.0
C E:LEU3 4.6 71.8 1.0
O E:LEU3 4.6 71.6 1.0
OE1 B:GLN80 4.7 38.5 1.0
CA E:THR4 4.7 71.1 1.0
CB E:LEU3 4.8 72.0 1.0
CG2 B:VAL174 4.8 43.1 1.0
O E:ARG5 4.8 70.5 1.0
CZ B:TYR854 4.8 41.0 1.0
C E:ARG5 4.9 70.8 1.0
CB B:GLU177 5.0 44.4 1.0

Reference:

K.A.Johnson, S.Bhushan, B.M.Hallberg, A.Frohn, E.Glaser, T.Eneqvist. The Closed Structure of Presequence Protease Prep Forms A Unique 10 000 A(3) Chamber For Proteolysis Embo J. V. 25 1977 2006.
ISSN: ISSN 0261-4189
PubMed: 16601675
DOI: 10.1038/SJ.EMBOJ.7601080
Page generated: Wed Dec 16 03:28:11 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy