Zinc in PDB 2ffw: Solution Structure of the Rbcc/Trim B-BOX1 Domain of Human MID1: B-Box with A Ring

The binding sites of Zinc atom in the Solution Structure of the Rbcc/Trim B-BOX1 Domain of Human MID1: B-Box with A Ring (pdb code 2ffw). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Rbcc/Trim B-BOX1 Domain of Human MID1: B-Box with A Ring, PDB code: 2ffw:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of the Rbcc/Trim B-BOX1 Domain of Human MID1: B-Box with A Ring


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Rbcc/Trim B-BOX1 Domain of Human MID1: B-Box with A Ring within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn200 b:14.5 occ:1.00 SG A:CYS119 2.3 63.0 1.0 SG A:CYS142 2.4 12.1 1.0 SG A:CYS122 2.4 75.3 1.0 SG A:CYS145 2.4 3.4 1.0 HB2 A:CYS145 2.8 15.5 1.0 HB3 A:CYS119 3.0 42.0 1.0 H A:CYS142 3.1 42.3 1.0 CB A:CYS119 3.1 54.0 1.0 CB A:CYS145 3.2 23.0 1.0 HB2 A:CYS119 3.3 23.3 1.0 H A:CYS145 3.4 62.3 1.0 HB3 A:CYS142 3.4 22.2 1.0 H A:CYS122 3.5 21.1 1.0 CB A:CYS122 3.5 55.0 1.0 CB A:CYS142 3.5 12.2 1.0 HB2 A:CYS122 3.6 31.2 1.0 HA A:CYS122 3.6 54.3 1.0 N A:CYS122 3.8 1.0 1.0 HB3 A:PHE121 3.8 44.2 1.0 CA A:CYS122 3.9 65.0 1.0 HB3 A:CYS145 3.9 22.3 1.0 N A:CYS142 3.9 45.0 1.0 HB3 A:GLN128 4.0 32.5 1.0 N A:CYS145 4.2 61.5 1.0 CA A:CYS145 4.3 53.2 1.0 CA A:CYS142 4.3 44.2 1.0 HB2 A:CYS142 4.4 35.0 1.0 HB3 A:TYR141 4.5 2.0 1.0 HB3 A:CYS122 4.5 3.2 1.0 CA A:CYS119 4.5 45.3 1.0 C A:PHE121 4.5 34.1 1.0 HB2 A:GLU144 4.6 31.2 1.0 HA A:TYR141 4.6 30.2 1.0 H A:GLN128 4.7 25.1 1.0 CB A:PHE121 4.7 54.2 1.0 HA A:CYS145 4.7 41.2 1.0 O A:GLN128 4.7 45.1 1.0 HB2 A:PHE121 4.8 33.4 1.0 HB2 A:GLN128 4.8 74.2 1.0 CB A:GLN128 4.8 21.1 1.0 H A:PHE121 4.8 73.4 1.0 HD1 A:TYR141 4.9 3.4 1.0 OE1 A:GLN128 4.9 23.3 1.0 HA A:CYS119 4.9 15.3 1.0 C A:CYS142 4.9 13.3 1.0 C A:CYS119 4.9 75.1 1.0 H A:LEU146 5.0 42.3 1.0 C A:TYR141 5.0 52.1 1.0

Zinc binding site 2 out of 2 in the Solution Structure of the Rbcc/Trim B-BOX1 Domain of Human MID1: B-Box with A Ring


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Rbcc/Trim B-BOX1 Domain of Human MID1: B-Box with A Ring within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:11.3 occ:1.00 NE2 A:HIS150 2.1 4.3 1.0 ND1 A:HIS159 2.1 12.2 1.0 SG A:CYS134 2.3 34.3 1.0 SG A:CYS137 2.4 1.3 1.0 CE1 A:HIS159 2.6 71.1 1.0 CE1 A:HIS150 2.8 44.1 1.0 CG A:HIS159 2.9 40.3 1.0 HE1 A:HIS150 2.9 45.3 1.0 HE1 A:HIS159 2.9 74.1 1.0 HB3 A:CYS134 3.1 41.5 1.0 CB A:CYS134 3.1 64.1 1.0 HB2 A:CYS134 3.2 63.3 1.0 CD2 A:HIS150 3.2 3.4 1.0 HB2 A:CYS137 3.3 71.4 1.0 HB3 A:HIS159 3.3 73.0 1.0 NE2 A:HIS159 3.4 5.5 1.0 CD2 A:HIS159 3.5 42.0 1.0 CB A:CYS137 3.5 21.3 1.0 CB A:HIS159 3.6 4.1 1.0 HD2 A:HIS150 3.7 53.4 1.0 H A:CYS137 3.8 13.4 1.0 HB2 A:HIS159 3.8 54.2 1.0 HB A:THR136 3.9 23.3 1.0 ND1 A:HIS150 4.0 30.3 1.0 CG A:HIS150 4.2 74.1 1.0 N A:CYS137 4.2 24.2 1.0 H A:ARG160 4.3 15.4 1.0 HB3 A:CYS137 4.3 64.2 1.0 CA A:CYS137 4.4 25.2 1.0 HD2 A:HIS159 4.4 55.2 1.0 HE2 A:TYR141 4.5 64.5 1.0 CA A:CYS134 4.5 54.0 1.0 HA A:CYS137 4.7 63.3 1.0 HG23 A:THR136 4.7 63.0 1.0 O A:ARG160 4.8 12.0 1.0 CB A:THR136 4.9 41.1 1.0 HA A:CYS134 4.9 30.2 1.0

M.A.Massiah, B.N.Simmons, K.M.Short, T.C.Cox. Solution Structure of the Rbcc/Trim B-BOX1 Domain of Human MID1: B-Box with A Ring. J.Mol.Biol. V. 358 532 2006.
ISSN: ISSN 0022-2836
PubMed: 16529770
DOI: 10.1016/J.JMB.2006.02.009