Zinc in PDB 2fea: Crystal Structure of Mtnx Phosphatase From Bacillus Subtilis at 2.00 A Resolution

The structure of Crystal Structure of Mtnx Phosphatase From Bacillus Subtilis at 2.00 A Resolution, PDB code: 2fea was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	22.95 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	59.013, 43.104, 109.553, 90.00, 98.91, 90.00
R / Rfree (%)	16 / 21.7

The structure of Crystal Structure of Mtnx Phosphatase From Bacillus Subtilis at 2.00 A Resolution also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Zinc atom in the Crystal Structure of Mtnx Phosphatase From Bacillus Subtilis at 2.00 A Resolution (pdb code 2fea). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Mtnx Phosphatase From Bacillus Subtilis at 2.00 A Resolution, PDB code: 2fea:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Mtnx Phosphatase From Bacillus Subtilis at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Mtnx Phosphatase From Bacillus Subtilis at 2.00 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1302 b:40.4 occ:1.00 SG A:CYS139 2.2 38.7 1.0 SG A:CYS143 2.3 39.4 1.0 SG A:CYS150 2.4 39.6 1.0 SG A:CYS147 2.4 41.1 1.0 CB A:CYS150 3.2 35.8 1.0 CB A:CYS139 3.3 37.6 1.0 CB A:CYS143 3.3 38.0 1.0 CB A:CYS147 3.4 41.2 1.0 CA A:CYS139 3.9 36.5 1.0 CA A:CYS150 4.0 37.1 1.0 N A:CYS147 4.2 41.7 1.0 N A:ASN145 4.4 50.3 1.0 CA A:CYS147 4.4 40.8 1.0 N A:CYS139 4.5 39.4 1.0 CA A:CYS143 4.5 37.8 1.0 C A:CYS143 4.6 39.4 1.0 O A:HOH1334 4.6 34.2 1.0 CB A:ASN145 4.6 47.9 1.0 OG A:SER153 4.7 33.4 1.0 N A:GLN146 4.8 48.0 1.0 CA A:ASN145 4.8 49.3 1.0 O A:CYS143 4.9 38.0 1.0 C A:ASN145 4.9 48.4 1.0 C A:CYS150 4.9 36.7 1.0 N A:SER144 4.9 42.2 1.0 CD A:PRO152 5.0 39.5 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Mtnx Phosphatase From Bacillus Subtilis at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Mtnx Phosphatase From Bacillus Subtilis at 2.00 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn2302 b:41.4 occ:1.00 SG B:CYS143 2.3 40.2 1.0 SG B:CYS139 2.4 38.3 1.0 SG B:CYS150 2.4 35.6 1.0 SG B:CYS147 2.4 40.7 1.0 CB B:CYS150 3.1 35.8 1.0 CB B:CYS143 3.2 40.0 1.0 CB B:CYS139 3.4 40.6 1.0 CB B:CYS147 3.4 37.9 1.0 OD1 B:ASN145 3.7 63.2 1.0 CA B:CYS139 3.9 37.1 1.0 CA B:CYS150 4.0 36.5 1.0 N B:CYS147 4.2 41.0 1.0 CA B:CYS147 4.4 39.0 1.0 CA B:CYS143 4.5 41.9 1.0 OG B:SER153 4.6 37.1 1.0 N B:CYS139 4.6 37.3 1.0 C B:CYS143 4.6 43.3 1.0 N B:ASN145 4.7 48.7 1.0 CG B:ASN145 4.7 53.4 1.0 O B:HOH2451 4.7 55.0 1.0 N B:GLN146 4.7 42.6 1.0 O B:CYS143 4.8 44.8 1.0 C B:CYS150 4.9 36.3 1.0 C B:ASN145 5.0 45.2 1.0 O B:HOH2360 5.0 39.9 1.0

Q.Xu, K.S.Saikatendu, S.S.Krishna, D.Mcmullan, P.Abdubek, S.Agarwalla, E.Ambing, T.Astakhova, H.L.Axelrod, D.Carlton, H.J.Chiu, T.Clayton, M.Didonato, L.Duan, M.A.Elsliger, J.Feuerhelm, S.K.Grzechnik, J.Hale, E.Hampton, G.W.Han, J.Haugen, L.Jaroszewski, K.K.Jin, H.E.Klock, M.W.Knuth, E.Koesema, M.D.Miller, A.T.Morse, E.Nigoghossian, L.Okach, S.Oommachen, J.Paulsen, R.Reyes, C.L.Rife, R.Schwarzenbacher, H.Van Den Bedem, A.White, G.Wolf, K.O.Hodgson, J.Wooley, A.M.Deacon, A.Godzik, S.A.Lesley, I.A.Wilson. Crystal Structure of Mtnx Phosphatase From Bacillus Subtilis at 2.0 A Resolution Provides A Structural Basis For Bipartite Phosphomonoester Hydrolysis of 2-Hydroxy-3-Keto-5-Methylthiopentenyl-1-Phosphate. Proteins V. 69 433 2007.
ISSN: ISSN 0887-3585
PubMed: 17654724
DOI: 10.1002/PROT.21602