Zinc in PDB 2fe3: The Crystal Structure of Bacillus Subtilis Perr-Zn Reveals A Novel Zn(Cys)4 Structural Redox Switch

The structure of The Crystal Structure of Bacillus Subtilis Perr-Zn Reveals A Novel Zn(Cys)4 Structural Redox Switch, PDB code: 2fe3 was solved by D.A.K.Traore, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.79 / 1.75
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	41.290, 42.160, 53.490, 82.18, 80.11, 60.96
R / Rfree (%)	17.2 / 22.9

The binding sites of Zinc atom in the The Crystal Structure of Bacillus Subtilis Perr-Zn Reveals A Novel Zn(Cys)4 Structural Redox Switch (pdb code 2fe3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Crystal Structure of Bacillus Subtilis Perr-Zn Reveals A Novel Zn(Cys)4 Structural Redox Switch, PDB code: 2fe3:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the The Crystal Structure of Bacillus Subtilis Perr-Zn Reveals A Novel Zn(Cys)4 Structural Redox Switch


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of Bacillus Subtilis Perr-Zn Reveals A Novel Zn(Cys)4 Structural Redox Switch within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:18.4 occ:1.00 SG A:CYS136 2.3 18.8 1.0 SG A:CYS99 2.3 19.7 1.0 SG A:CYS139 2.3 18.8 1.0 SG A:CYS96 2.4 16.7 1.0 CB A:CYS96 3.2 15.9 1.0 CB A:CYS99 3.3 20.1 1.0 CB A:CYS139 3.3 17.7 1.0 CB A:CYS136 3.4 17.4 1.0 N A:CYS99 3.8 20.1 1.0 N A:CYS136 4.0 16.1 1.0 CA A:CYS99 4.1 19.5 1.0 CA A:CYS136 4.2 17.2 1.0 N A:CYS139 4.3 18.5 1.0 O A:HOH270 4.3 42.4 1.0 CA A:CYS139 4.4 18.1 1.0 CB A:LYS101 4.6 19.1 1.0 O A:HOH305 4.6 37.7 1.0 CB A:ASN98 4.6 21.7 1.0 CA A:CYS96 4.7 15.8 1.0 C A:ASN98 4.8 21.1 1.0 CE A:LYS101 4.8 24.4 1.0 C A:CYS99 4.8 19.6 1.0 O A:CYS136 4.9 15.7 1.0 C A:CYS136 4.9 17.4 1.0 N A:GLY100 5.0 18.5 1.0

Zinc binding site 2 out of 2 in the The Crystal Structure of Bacillus Subtilis Perr-Zn Reveals A Novel Zn(Cys)4 Structural Redox Switch


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Crystal Structure of Bacillus Subtilis Perr-Zn Reveals A Novel Zn(Cys)4 Structural Redox Switch within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn202 b:22.4 occ:1.00 SG B:CYS139 2.3 27.3 1.0 SG B:CYS96 2.4 19.0 1.0 SG B:CYS136 2.4 24.3 1.0 SG B:CYS99 2.4 21.3 1.0 CB B:CYS139 3.2 32.9 1.0 CB B:CYS99 3.3 21.8 1.0 CB B:CYS96 3.3 18.6 1.0 CB B:CYS136 3.4 24.0 1.0 N B:CYS99 3.8 22.5 1.0 N B:CYS136 4.0 22.3 1.0 CA B:CYS99 4.1 21.7 1.0 N B:CYS139 4.2 32.9 1.0 CA B:CYS136 4.3 24.1 1.0 CA B:CYS139 4.3 32.8 1.0 O B:HOH261 4.4 36.3 1.0 O B:HOH317 4.5 52.1 1.0 CB B:LYS101 4.6 19.8 1.0 CB B:ASN98 4.7 25.6 1.0 CA B:CYS96 4.7 18.6 1.0 C B:ASN98 4.7 24.4 1.0 C B:CYS99 4.8 21.2 1.0 CE B:LYS101 4.9 25.4 1.0 O B:CYS136 4.9 24.9 1.0 C B:CYS136 4.9 25.6 1.0 N B:GLY100 4.9 18.9 1.0

D.A.K.Traore, A.El Ghazouani, S.Ilango, J.Dupuy, L.Jacquamet, J.-L.Ferrer, C.Caux-Thang, V.Duarte, J.M.Latour. Crystal Structure of the Apo-Perr-Zn Protein From Bacillus Subtilis. Mol.Microbiol. V. 61 1211 2006.
ISSN: ISSN 0950-382X
PubMed: 16925555
DOI: 10.1111/J.1365-2958.2006.05313.X