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Zinc in PDB 2f6s: Structure of Cell Filamentation Protein (Fic) From Helicobacter Pylori

Protein crystallography data

The structure of Structure of Cell Filamentation Protein (Fic) From Helicobacter Pylori, PDB code: 2f6s was solved by M.E.Cuff, X.Xu, H.Zheng, A.Edwards, A.Savchenko, A.Joachimiak, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.50
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 86.140, 86.140, 164.892, 90.00, 90.00, 120.00
R / Rfree (%) 16.9 / 21.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Cell Filamentation Protein (Fic) From Helicobacter Pylori (pdb code 2f6s). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Cell Filamentation Protein (Fic) From Helicobacter Pylori, PDB code: 2f6s:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2f6s

Go back to Zinc Binding Sites List in 2f6s
Zinc binding site 1 out of 2 in the Structure of Cell Filamentation Protein (Fic) From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Cell Filamentation Protein (Fic) From Helicobacter Pylori within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1101

b:39.6
occ:1.00
O2 B:PO41001 2.0 37.1 1.0
ND1 A:HIS0 2.0 45.1 1.0
NE2 A:HIS2 2.1 46.7 1.0
NE2 B:HIS96 2.1 53.0 1.0
CE1 A:HIS2 2.9 48.6 1.0
CG A:HIS0 2.9 48.2 1.0
CD2 B:HIS96 3.0 57.9 1.0
CE1 A:HIS0 3.1 44.5 1.0
CE1 B:HIS96 3.1 56.9 1.0
CD2 A:HIS2 3.1 49.0 1.0
P B:PO41001 3.2 41.8 1.0
CB A:HIS0 3.2 51.6 1.0
O1 B:PO41001 3.4 39.6 1.0
ND1 A:HIS2 4.1 50.4 1.0
CD2 A:HIS0 4.1 45.5 1.0
O B:HOH5504 4.1 43.6 1.0
NE2 A:HIS0 4.1 46.1 1.0
CG B:HIS96 4.1 57.6 1.0
O3 B:PO41001 4.2 40.0 1.0
ND1 B:HIS96 4.2 58.4 1.0
O4 B:PO41001 4.2 41.6 1.0
CG A:HIS2 4.2 53.1 1.0
CE2 B:PHE61 4.3 57.6 1.0
CZ B:PHE61 4.4 58.5 1.0
ND2 B:ASN102 4.6 59.0 1.0
CA A:HIS0 4.6 53.1 1.0
N A:HIS0 5.0 53.9 1.0
CD2 B:PHE61 5.0 58.4 1.0

Zinc binding site 2 out of 2 in 2f6s

Go back to Zinc Binding Sites List in 2f6s
Zinc binding site 2 out of 2 in the Structure of Cell Filamentation Protein (Fic) From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Cell Filamentation Protein (Fic) From Helicobacter Pylori within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn5501

b:42.8
occ:1.00
O4 A:PO45001 2.0 41.3 1.0
ND1 B:HIS0 2.1 46.2 1.0
NE2 B:HIS2 2.1 47.9 1.0
NE2 A:HIS96 2.1 51.6 1.0
CG B:HIS0 2.9 50.4 1.0
CD2 A:HIS96 2.9 56.4 1.0
CD2 B:HIS2 3.0 49.5 1.0
CE1 B:HIS2 3.1 49.0 1.0
CE1 B:HIS0 3.1 47.7 1.0
CE1 A:HIS96 3.2 53.7 1.0
P A:PO45001 3.2 43.1 1.0
CB B:HIS0 3.2 54.3 1.0
O3 A:PO45001 3.3 41.9 1.0
O2 A:PO45001 4.0 42.1 1.0
O A:HOH5080 4.1 52.9 1.0
CD2 B:HIS0 4.1 48.9 1.0
O A:HOH5059 4.1 38.0 1.0
CG A:HIS96 4.1 57.3 1.0
ND1 B:HIS2 4.2 49.9 1.0
NE2 B:HIS0 4.2 48.9 1.0
CG B:HIS2 4.2 51.2 1.0
ND1 A:HIS96 4.2 56.8 1.0
O1 A:PO45001 4.2 41.6 1.0
CE2 A:PHE61 4.2 56.3 1.0
CZ A:PHE61 4.3 56.3 1.0
OD1 A:ASN102 4.6 62.8 1.0
CA B:HIS0 4.6 55.2 1.0
OE2 A:GLU100 4.9 62.5 1.0
CD2 A:PHE61 5.0 54.9 1.0

Reference:

M.E.Cuff, X.Xu, H.Zheng, A.Edwards, A.Savchenko, A.Joachimiak. Structure of Cell Filamentation Protein (Fic) From Helicobacter Pylori To Be Published.
Page generated: Wed Dec 16 03:27:50 2020

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