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Zinc in PDB 2f5w: Cross-Linked Barnase Soaked in 3 M Thiourea

Protein crystallography data

The structure of Cross-Linked Barnase Soaked in 3 M Thiourea, PDB code: 2f5w was solved by T.Prange, M.Salem, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.00
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 59.500, 59.500, 81.510, 90.00, 90.00, 120.00
R / Rfree (%) n/a / n/a

Zinc Binding Sites:

The binding sites of Zinc atom in the Cross-Linked Barnase Soaked in 3 M Thiourea (pdb code 2f5w). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cross-Linked Barnase Soaked in 3 M Thiourea, PDB code: 2f5w:

Zinc binding site 1 out of 1 in 2f5w

Go back to Zinc Binding Sites List in 2f5w
Zinc binding site 1 out of 1 in the Cross-Linked Barnase Soaked in 3 M Thiourea


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cross-Linked Barnase Soaked in 3 M Thiourea within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn150

b:76.0
occ:1.00
OE2 C:GLU58 2.4 61.1 1.0
OE1 C:GLU58 2.4 74.2 1.0
CD C:GLU58 2.7 53.6 1.0
NZ C:LYS60 3.1 25.6 1.0
CE C:LYS60 4.0 31.1 1.0
CG C:GLU58 4.2 37.8 1.0
O C:HOH284 4.3 42.2 1.0
O C:TYR101 4.3 18.3 1.0
CA C:GLN102 4.8 19.9 1.0
CG C:GLN102 4.9 34.6 1.0

Reference:

M.Salem, Y.Mauguen, T.Prange. On the Edge of the Denaturation Process: Application of X-Ray Diffraction to Barnase and Lysozyme Cross-Linked Crystals with Denaturants in Molar Concentrations. Biochim.Biophys.Acta V.1764 903 2006.
ISSN: ISSN 0006-3002
PubMed: 16600702
DOI: 10.1016/J.BBAPAP.2006.02.009
Page generated: Wed Oct 16 23:39:26 2024

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