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Zinc in PDB 2f4o: The Mouse Pngase-HR23 Complex Reveals A Complete Remodulation of the Protein-Protein Interface Compared to Its Yeast Orthologs

Enzymatic activity of The Mouse Pngase-HR23 Complex Reveals A Complete Remodulation of the Protein-Protein Interface Compared to Its Yeast Orthologs

All present enzymatic activity of The Mouse Pngase-HR23 Complex Reveals A Complete Remodulation of the Protein-Protein Interface Compared to Its Yeast Orthologs:
3.5.1.52;

Protein crystallography data

The structure of The Mouse Pngase-HR23 Complex Reveals A Complete Remodulation of the Protein-Protein Interface Compared to Its Yeast Orthologs, PDB code: 2f4o was solved by G.Zhao, X.Zhou, L.Wang, C.Kisker, W.J.Lennarz, H.Schindelin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.26
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 96.958, 52.097, 80.848, 90.00, 113.50, 90.00
R / Rfree (%) 22 / 29.3

Other elements in 2f4o:

The structure of The Mouse Pngase-HR23 Complex Reveals A Complete Remodulation of the Protein-Protein Interface Compared to Its Yeast Orthologs also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the The Mouse Pngase-HR23 Complex Reveals A Complete Remodulation of the Protein-Protein Interface Compared to Its Yeast Orthologs (pdb code 2f4o). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Mouse Pngase-HR23 Complex Reveals A Complete Remodulation of the Protein-Protein Interface Compared to Its Yeast Orthologs, PDB code: 2f4o:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2f4o

Go back to Zinc Binding Sites List in 2f4o
Zinc binding site 1 out of 2 in the The Mouse Pngase-HR23 Complex Reveals A Complete Remodulation of the Protein-Protein Interface Compared to Its Yeast Orthologs


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Mouse Pngase-HR23 Complex Reveals A Complete Remodulation of the Protein-Protein Interface Compared to Its Yeast Orthologs within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:68.9
occ:1.00
 SG A:CYS250 2.2 60.9 1.0
SG A:CYS280 2.3 59.5 1.0
SG A:CYS283 2.3 57.9 1.0
SG A:CYS247 2.5 62.3 1.0
CB A:CYS283 3.1 58.2 1.0
CB A:CYS247 3.2 63.7 1.0
CB A:CYS250 3.2 63.5 1.0
CB A:CYS280 3.4 58.9 1.0
N A:CYS250 3.7 64.4 1.0
N A:CYS283 4.0 58.4 1.0
CA A:CYS250 4.0 64.0 1.0
CA A:CYS283 4.2 58.3 1.0
CB A:LYS249 4.5 65.0 1.0
CB A:ALA282 4.7 57.2 1.0
CA A:CYS247 4.7 63.4 1.0
C A:CYS250 4.7 64.2 1.0
CA A:CYS280 4.8 58.9 1.0
N A:GLY251 4.8 64.5 1.0
C A:LYS249 4.8 64.9 1.0
CD2 A:LEU285 4.9 59.9 1.0
C A:ALA282 4.9 57.6 1.0

Zinc binding site 2 out of 2 in 2f4o

Go back to Zinc Binding Sites List in 2f4o
Zinc binding site 2 out of 2 in the The Mouse Pngase-HR23 Complex Reveals A Complete Remodulation of the Protein-Protein Interface Compared to Its Yeast Orthologs


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Mouse Pngase-HR23 Complex Reveals A Complete Remodulation of the Protein-Protein Interface Compared to Its Yeast Orthologs within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn502

b:62.8
occ:1.00
 ND1 A:HIS457 2.2 75.5 1.0
CD2 A:HIS455 2.7 83.7 1.0
ND1 A:HIS454 2.8 84.4 1.0
NE2 A:HIS455 2.8 83.0 1.0
CE1 A:HIS454 2.9 84.3 1.0
CE1 A:HIS457 3.0 74.6 1.0
CG A:HIS457 3.1 78.0 1.0
CB A:HIS457 3.5 80.5 1.0
CG A:HIS455 3.6 84.8 1.0
CE1 A:HIS455 3.8 82.9 1.0
NE2 A:HIS457 4.0 74.2 1.0
CD2 A:HIS457 4.1 76.0 1.0
CG A:HIS454 4.1 85.1 1.0
ND1 A:HIS455 4.2 84.7 1.0
NE2 A:HIS454 4.2 84.6 1.0
CA A:HIS455 4.3 84.6 1.0
N A:HIS455 4.5 84.8 1.0
CB A:HIS455 4.6 84.3 1.0
C A:HIS454 4.6 85.2 1.0
CD2 A:HIS454 4.8 85.0 1.0
O A:HIS454 4.9 85.6 1.0
CA A:HIS457 5.0 81.0 1.0
CB A:HIS454 5.0 85.2 1.0

Reference:

G.Zhao, X.Zhou, L.Wang, G.Li, C.Kisker, W.J.Lennarz, H.Schindelin. Structure of the Mouse Peptide N-Glycanase-HR23 Complex Suggests Co-Evolution of the Endoplasmic Reticulum-Associated Degradation and Dna Repair Pathways. J.Biol.Chem. V. 281 13751 2006.
ISSN: ISSN 0021-9258
PubMed: 16500903
DOI: 10.1074/JBC.M600137200
Page generated: Wed Oct 16 23:37:56 2024

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