Zinc in PDB 2ehs: Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1)

The structure of Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1), PDB code: 2ehs was solved by H.Mizutani, N.Kunishima, Riken Structural Genomics/Proteomicsinitiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	30.488, 36.970, 56.797, 90.00, 90.00, 90.00
R / Rfree (%)	19.7 / 22.2

The structure of Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1) also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Zinc atom in the Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1) (pdb code 2ehs). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 7 binding sites of Zinc where determined in the Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1), PDB code: 2ehs:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7;

Zinc binding site 1 out of 7 in the Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:24.1 occ:1.00 OE2 A:GLU12 2.2 26.5 1.0 CD A:GLU12 2.8 22.7 1.0 OE1 A:GLU12 2.8 26.7 1.0 O A:HOH281 3.9 22.4 1.0 O A:HOH210 4.0 18.4 1.0 NA A:NA201 4.1 13.1 1.0 CG A:GLU12 4.2 20.3 1.0 O A:HOH319 4.3 28.4 1.0 O A:HOH209 4.7 17.5 1.0

Zinc binding site 2 out of 7 in the Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn203 b:13.8 occ:1.00 OE1 A:GLU19 2.1 16.5 1.0 CD A:GLU19 2.8 16.3 1.0 OE2 A:GLU19 2.8 17.5 1.0 OE2 A:GLU17 3.6 25.0 1.0 CG A:GLU17 4.1 22.0 1.0 N A:LYS18 4.2 14.0 1.0 CG A:GLU19 4.3 16.7 1.0 CD A:GLU17 4.3 23.4 1.0 N A:GLU19 4.4 13.4 1.0 CB A:LYS18 4.4 13.7 1.0 CA A:LYS18 4.8 13.3 1.0 CB A:GLU17 4.8 18.6 1.0 CB A:GLU19 4.9 14.4 1.0 C A:GLU17 5.0 14.2 1.0

Zinc binding site 3 out of 7 in the Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn204 b:22.1 occ:1.00 O A:HOH309 2.0 24.6 1.0 OE2 A:GLU29 2.1 17.1 1.0 O A:HOH223 2.5 17.0 1.0 CD A:GLU29 2.9 12.9 1.0 OE1 A:GLU29 3.1 14.2 1.0 CG A:GLU29 4.3 13.1 1.0 CD A:LYS26 4.5 16.0 1.0 O A:HOH215 4.6 12.2 1.0 NZ A:LYS26 4.9 24.2 1.0 CB A:VAL28 4.9 10.3 1.0 CE A:LYS26 4.9 18.4 1.0

Zinc binding site 4 out of 7 in the Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn205 b:11.6 occ:1.00 OD1 A:ASP30 1.9 11.1 1.0 O A:HOH310 2.0 10.3 1.0 O A:HOH222 2.0 16.3 1.0 CG A:ASP30 2.7 10.5 1.0 OD2 A:ASP30 2.9 10.6 1.0 O A:HOH225 4.1 21.2 1.0 CB A:ASP30 4.1 10.1 1.0 O A:HOH213 4.2 21.5 1.0 O A:HOH217 4.2 11.9 1.0 CB A:GLU29 4.4 10.6 1.0 N A:ASP30 4.6 9.2 1.0 CA A:ASP30 4.6 9.6 1.0 C A:GLU29 4.6 9.4 1.0 O A:GLU29 4.7 10.9 1.0

Zinc binding site 5 out of 7 in the Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn206 b:19.2 occ:1.00 O A:HOH306 1.9 17.9 1.0 O A:HOH305 1.9 11.0 1.0 O A:HOH280 2.0 17.4 1.0 OE2 A:GLU46 2.2 12.7 1.0 OE1 A:GLU52 2.9 18.2 1.0 CD A:GLU46 3.0 9.8 1.0 OE1 A:GLU46 3.1 8.8 1.0 O A:HOH317 3.2 32.9 1.0 O A:ILE53 3.8 15.1 1.0 CD A:GLU52 3.9 18.6 1.0 O A:HOH216 4.1 12.9 1.0 N A:ILE53 4.3 13.2 1.0 CG A:GLU46 4.4 8.8 1.0 OE2 A:GLU52 4.4 18.8 1.0 C A:ILE53 4.5 15.5 1.0 CA A:GLU52 4.8 16.3 1.0 CB A:GLU52 4.8 17.5 1.0 CG A:GLU52 4.9 19.5 1.0 CA A:ILE53 5.0 13.4 1.0

Zinc binding site 6 out of 7 in the Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn207 b:15.0 occ:1.00 O A:HOH311 1.9 22.1 1.0 OD2 A:ASP57 2.0 12.1 1.0 CG A:ASP57 2.8 14.4 1.0 OD1 A:ASP57 3.0 15.2 1.0 OH A:TYR70 3.8 16.3 1.0 CE1 A:TYR70 4.1 14.6 1.0 CB A:ASP57 4.2 14.4 1.0 CZ A:TYR70 4.4 14.4 1.0 CG A:PRO54 4.6 19.3 1.0 OE2 A:GLU56 4.7 32.2 1.0 NZ A:LYS74 4.9 26.3 1.0

Zinc binding site 7 out of 7 in the Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus (Form 1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn208 b:8.9 occ:1.00 O A:HOH211 2.0 10.7 1.0 O A:HOH212 2.2 9.9 1.0 OD1 A:ASP66 2.3 10.2 1.0 OD2 A:ASP66 2.4 10.1 1.0 CG A:ASP66 2.7 9.8 1.0 OG1 A:THR63 4.1 9.1 1.0 O A:LYS60 4.1 12.7 1.0 CB A:ASP66 4.2 9.9 1.0 OE1 A:GLN62 4.3 13.2 1.0 CG2 A:THR63 4.6 11.1 1.0 CB A:GLN62 4.6 10.3 1.0 N A:THR63 4.8 9.9 1.0 N A:GLN62 4.8 12.0 1.0 CB A:THR63 4.9 9.0 1.0 CA A:ASP66 4.9 9.5 1.0 CG A:GLN62 4.9 12.5 1.0

H.Mizutani, N.Kunishima. Crystal Structure of Acyl Carrier Protein From Aquifex Aeolicus To Be Published.