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Zinc in PDB 2eer: Structural Study of Project Id ST2577 From Sulfolobus Tokodaii STRAIN7

Enzymatic activity of Structural Study of Project Id ST2577 From Sulfolobus Tokodaii STRAIN7

All present enzymatic activity of Structural Study of Project Id ST2577 From Sulfolobus Tokodaii STRAIN7:
1.1.1.1;

Protein crystallography data

The structure of Structural Study of Project Id ST2577 From Sulfolobus Tokodaii STRAIN7, PDB code: 2eer was solved by Y.Asada, N.Kunishima, Riken Structural Genomics/Proteomics Initiative(Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.88 / 2.10
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 86.171, 86.171, 165.870, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 22.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Structural Study of Project Id ST2577 From Sulfolobus Tokodaii STRAIN7 (pdb code 2eer). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structural Study of Project Id ST2577 From Sulfolobus Tokodaii STRAIN7, PDB code: 2eer:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2eer

Go back to Zinc Binding Sites List in 2eer
Zinc binding site 1 out of 2 in the Structural Study of Project Id ST2577 From Sulfolobus Tokodaii STRAIN7


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Study of Project Id ST2577 From Sulfolobus Tokodaii STRAIN7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:23.6
occ:1.00
OE2 A:GLU98 2.2 32.5 1.0
SG A:CYS112 2.3 20.8 1.0
SG A:CYS104 2.4 19.6 1.0
SG A:CYS101 2.4 21.9 1.0
CD A:GLU98 3.1 30.5 1.0
CB A:CYS112 3.1 20.6 1.0
CB A:CYS104 3.4 18.7 1.0
CB A:CYS101 3.4 24.6 1.0
CG A:GLU98 3.5 29.8 1.0
CA A:CYS112 3.6 20.8 1.0
N A:GLU98 3.8 27.1 1.0
N A:CYS101 3.8 24.3 1.0
N A:GLY99 3.8 28.2 1.0
N A:ASP113 4.0 23.4 1.0
CA A:CYS101 4.1 24.7 1.0
N A:CYS104 4.1 18.3 1.0
OE1 A:GLU98 4.1 31.1 1.0
C A:CYS112 4.2 22.0 1.0
CA A:CYS104 4.3 18.5 1.0
CA A:GLU98 4.5 28.5 1.0
N A:ASN100 4.5 25.6 1.0
O A:CYS101 4.6 24.7 1.0
C A:GLU98 4.6 28.6 1.0
CB A:GLU98 4.6 28.8 1.0
CA A:GLY97 4.6 24.7 1.0
C A:GLY97 4.6 26.5 1.0
C A:CYS101 4.6 24.8 1.0
CA A:GLY99 4.6 26.2 1.0
C A:GLY99 4.8 26.6 1.0
N A:CYS112 4.8 20.1 1.0
O A:HOH522 4.8 21.7 1.0
N A:SER114 4.8 24.6 1.0
C A:ASN100 4.9 26.0 1.0

Zinc binding site 2 out of 2 in 2eer

Go back to Zinc Binding Sites List in 2eer
Zinc binding site 2 out of 2 in the Structural Study of Project Id ST2577 From Sulfolobus Tokodaii STRAIN7


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structural Study of Project Id ST2577 From Sulfolobus Tokodaii STRAIN7 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn502

b:25.5
occ:1.00
OE2 B:GLU98 2.2 27.8 1.0
SG B:CYS101 2.3 23.9 1.0
SG B:CYS104 2.3 25.9 1.0
SG B:CYS112 2.4 24.4 1.0
CD B:GLU98 3.1 29.5 1.0
CB B:CYS112 3.2 21.1 1.0
CB B:CYS101 3.3 25.7 1.0
CB B:CYS104 3.4 24.2 1.0
CG B:GLU98 3.5 28.9 1.0
CA B:CYS112 3.6 21.9 1.0
N B:GLU98 3.7 27.8 1.0
N B:CYS101 3.8 26.4 1.0
N B:GLY99 3.8 28.7 1.0
N B:ASP113 3.9 23.2 1.0
CA B:CYS101 4.0 24.5 1.0
N B:CYS104 4.2 22.2 1.0
OE1 B:GLU98 4.3 29.7 1.0
C B:CYS112 4.3 22.8 1.0
CA B:GLU98 4.4 29.1 1.0
CA B:CYS104 4.4 24.1 1.0
CB B:GLU98 4.5 29.1 1.0
C B:GLU98 4.5 29.9 1.0
N B:ASN100 4.6 26.3 1.0
C B:GLY97 4.6 25.8 1.0
C B:CYS101 4.6 25.2 1.0
O B:CYS101 4.6 25.5 1.0
CA B:GLY97 4.6 24.5 1.0
CA B:GLY99 4.6 27.3 1.0
C B:GLY99 4.8 27.9 1.0
N B:SER114 4.8 24.1 1.0
N B:CYS112 4.9 20.7 1.0
C B:ASN100 4.9 26.4 1.0
O B:HOH630 5.0 31.3 1.0

Reference:

Y.Asada, N.Kunishima. Structural Study of Project Id ST2577 From Sulfolobus Tokodaii STRAIN7 To Be Published.
Page generated: Wed Oct 16 23:06:27 2024

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