Zinc in PDB 2e6s: Solution Structure of the Phd Domain in Ring Finger Protein 107

The binding sites of Zinc atom in the Solution Structure of the Phd Domain in Ring Finger Protein 107 (pdb code 2e6s). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Solution Structure of the Phd Domain in Ring Finger Protein 107, PDB code: 2e6s:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Solution Structure of the Phd Domain in Ring Finger Protein 107


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Phd Domain in Ring Finger Protein 107 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 ND1 A:HIS52 2.1 0.0 1.0 SG A:CYS32 2.3 0.0 1.0 SG A:CYS55 2.3 0.0 1.0 SG A:CYS29 2.4 0.0 1.0 HB2 A:HIS52 2.8 0.0 1.0 CE1 A:HIS52 2.9 0.0 1.0 CG A:HIS52 2.9 0.0 1.0 HE1 A:HIS52 3.1 0.0 1.0 CB A:CYS29 3.2 0.0 1.0 HB3 A:CYS29 3.2 0.0 1.0 HB2 A:CYS29 3.3 0.0 1.0 H A:CYS32 3.3 0.0 1.0 HB2 A:CYS55 3.3 0.0 1.0 HB3 A:CYS32 3.3 0.0 1.0 CB A:CYS55 3.3 0.0 1.0 CB A:HIS52 3.4 0.0 1.0 CB A:CYS32 3.5 0.0 1.0 HB3 A:CYS55 3.5 0.0 1.0 HE1 A:TYR54 3.8 0.0 1.0 NE2 A:HIS52 3.9 0.0 1.0 CD2 A:HIS52 3.9 0.0 1.0 HB A:VAL31 3.9 0.0 1.0 H A:HIS52 3.9 0.0 1.0 H A:GLY34 3.9 0.0 1.0 HB3 A:HIS52 3.9 0.0 1.0 N A:CYS32 4.1 0.0 1.0 H A:GLY33 4.2 0.0 1.0 HB2 A:CYS32 4.3 0.0 1.0 CE1 A:TYR54 4.3 0.0 1.0 CA A:CYS32 4.4 0.0 1.0 HA3 A:GLY34 4.6 0.0 1.0 N A:HIS52 4.6 0.0 1.0 CA A:HIS52 4.6 0.0 1.0 HD1 A:TYR54 4.6 0.0 1.0 HE2 A:HIS52 4.7 0.0 1.0 CA A:CYS29 4.7 0.0 1.0 CA A:CYS55 4.8 0.0 1.0 CD1 A:TYR54 4.8 0.0 1.0 N A:GLY34 4.8 0.0 1.0 N A:GLY33 4.8 0.0 1.0 HD2 A:HIS52 4.9 0.0 1.0 CB A:VAL31 5.0 0.0 1.0 C A:CYS32 5.0 0.0 1.0 H A:VAL31 5.0 0.0 1.0

Zinc binding site 2 out of 3 in the Solution Structure of the Phd Domain in Ring Finger Protein 107


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Phd Domain in Ring Finger Protein 107 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:0.0 occ:1.00 SG A:CYS71 2.2 0.0 1.0 SG A:CYS47 2.2 0.0 1.0 SG A:CYS44 2.3 0.0 1.0 SG A:CYS74 2.4 0.0 1.0 HB2 A:CYS74 2.9 0.0 1.0 H A:CYS47 3.0 0.0 1.0 CB A:CYS44 3.2 0.0 1.0 CB A:CYS74 3.2 0.0 1.0 HB2 A:CYS44 3.2 0.0 1.0 HB3 A:CYS44 3.3 0.0 1.0 HB3 A:GLU46 3.3 0.0 1.0 HB3 A:CYS71 3.5 0.0 1.0 HG11 A:VAL49 3.5 0.0 1.0 HB3 A:CYS47 3.5 0.0 1.0 CB A:CYS47 3.5 0.0 1.0 CB A:CYS71 3.5 0.0 1.0 H A:CYS71 3.6 0.0 1.0 N A:CYS47 3.8 0.0 1.0 HG13 A:VAL49 3.8 0.0 1.0 HB3 A:CYS74 3.9 0.0 1.0 H A:CYS74 4.0 0.0 1.0 CG1 A:VAL49 4.1 0.0 1.0 HB3 A:SER73 4.2 0.0 1.0 N A:CYS71 4.2 0.0 1.0 N A:CYS74 4.2 0.0 1.0 CA A:CYS47 4.2 0.0 1.0 CA A:CYS74 4.3 0.0 1.0 HB2 A:CYS71 4.3 0.0 1.0 H A:ASN48 4.4 0.0 1.0 HB2 A:CYS47 4.4 0.0 1.0 CB A:GLU46 4.4 0.0 1.0 CA A:CYS71 4.4 0.0 1.0 H A:GLU46 4.6 0.0 1.0 HA A:CYS74 4.7 0.0 1.0 CA A:CYS44 4.7 0.0 1.0 H A:VAL49 4.7 0.0 1.0 O A:CYS71 4.7 0.0 1.0 HB2 A:GLU46 4.8 0.0 1.0 HD2 A:TYR70 4.8 0.0 1.0 HG12 A:VAL49 4.8 0.0 1.0 C A:GLU46 4.9 0.0 1.0 H A:SER73 4.9 0.0 1.0 N A:ASN48 4.9 0.0 1.0 HB A:VAL49 4.9 0.0 1.0 C A:CYS71 4.9 0.0 1.0 C A:CYS47 4.9 0.0 1.0 C A:SER73 5.0 0.0 1.0

Zinc binding site 3 out of 3 in the Solution Structure of the Phd Domain in Ring Finger Protein 107


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Solution Structure of the Phd Domain in Ring Finger Protein 107 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn601 b:0.0 occ:1.00 SG A:CYS27 2.3 0.0 1.0 SG A:CYS24 2.3 0.0 1.0 SG A:CYS16 2.3 0.0 1.0 SG A:CYS13 2.4 0.0 1.0 HB3 A:CYS13 3.1 0.0 1.0 HB2 A:CYS24 3.1 0.0 1.0 CB A:CYS24 3.2 0.0 1.0 HB2 A:LEU15 3.2 0.0 1.0 H A:CYS27 3.3 0.0 1.0 CB A:CYS13 3.3 0.0 1.0 HB3 A:CYS16 3.4 0.0 1.0 HB2 A:CYS27 3.4 0.0 1.0 HB3 A:CYS24 3.4 0.0 1.0 H A:CYS16 3.5 0.0 1.0 CB A:CYS27 3.5 0.0 1.0 CB A:CYS16 3.5 0.0 1.0 HB2 A:CYS13 3.6 0.0 1.0 HZ2 A:LYS35 3.8 0.0 1.0 N A:CYS16 3.9 0.0 1.0 HB3 A:SER26 3.9 0.0 1.0 N A:CYS27 4.1 0.0 1.0 CB A:LEU15 4.2 0.0 1.0 HB3 A:CYS27 4.3 0.0 1.0 HB2 A:CYS16 4.3 0.0 1.0 HD11 A:LEU15 4.3 0.0 1.0 CA A:CYS16 4.4 0.0 1.0 H A:GLY17 4.4 0.0 1.0 CA A:CYS27 4.4 0.0 1.0 HB3 A:LEU15 4.4 0.0 1.0 H A:SER26 4.6 0.0 1.0 C A:LEU15 4.6 0.0 1.0 CA A:CYS24 4.6 0.0 1.0 CA A:CYS13 4.7 0.0 1.0 H A:LEU15 4.7 0.0 1.0 HA A:CYS24 4.8 0.0 1.0 NZ A:LYS35 4.8 0.0 1.0 HA A:CYS27 4.8 0.0 1.0 CA A:LEU15 4.9 0.0 1.0 N A:LEU15 4.9 0.0 1.0 H A:GLY18 5.0 0.0 1.0 HD22 A:LEU15 5.0 0.0 1.0 CB A:SER26 5.0 0.0 1.0 C A:CYS13 5.0 0.0 1.0

S.Kadirvel, F.He, Y.Muto, M.Inoue, T.Kigawa, M.Shirouzu, T.Terada, S.Yokoyama. Solution Structure of the Phd Domain in Ring Finger Protein 107 To Be Published.