Atomistry » Zinc » PDB 1y8f-1yj6 » 2dlk
Atomistry »
  Zinc »
    PDB 1y8f-1yj6 »
      2dlk »

Zinc in PDB 2dlk: Solution Structure of the First and the Second Zf-C2H2 Domains of Zinc Finger Protein 692

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the First and the Second Zf-C2H2 Domains of Zinc Finger Protein 692 (pdb code 2dlk). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the First and the Second Zf-C2H2 Domains of Zinc Finger Protein 692, PDB code: 2dlk:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2dlk

Go back to Zinc Binding Sites List in 2dlk
Zinc binding site 1 out of 2 in the Solution Structure of the First and the Second Zf-C2H2 Domains of Zinc Finger Protein 692


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the First and the Second Zf-C2H2 Domains of Zinc Finger Protein 692 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
NE2 A:HIS28 2.0 0.0 1.0
NE2 A:HIS33 2.1 0.0 1.0
SG A:CYS15 2.3 0.0 1.0
SG A:CYS10 2.3 0.0 1.0
CD2 A:HIS33 2.8 0.0 1.0
HD2 A:HIS33 2.9 0.0 1.0
CD2 A:HIS28 3.0 0.0 1.0
CE1 A:HIS28 3.1 0.0 1.0
HD2 A:HIS28 3.1 0.0 1.0
CE1 A:HIS33 3.1 0.0 1.0
HB2 A:CYS15 3.2 0.0 1.0
HB2 A:ARG17 3.3 0.0 1.0
CB A:CYS15 3.3 0.0 1.0
HB2 A:CYS10 3.3 0.0 1.0
CB A:CYS10 3.3 0.0 1.0
HE1 A:HIS28 3.4 0.0 1.0
HB3 A:CYS10 3.5 0.0 1.0
HB3 A:CYS15 3.5 0.0 1.0
HE1 A:HIS33 3.5 0.0 1.0
HB2 A:PHE12 3.6 0.0 1.0
HG3 A:ARG17 3.8 0.0 1.0
HG2 A:LYS29 4.0 0.0 1.0
CG A:HIS33 4.0 0.0 1.0
CG A:HIS28 4.1 0.0 1.0
ND1 A:HIS33 4.1 0.0 1.0
ND1 A:HIS28 4.2 0.0 1.0
HZ A:PHE19 4.2 0.0 1.0
HD2 A:PHE12 4.2 0.0 1.0
CB A:ARG17 4.2 0.0 1.0
HE1 A:PHE19 4.4 0.0 1.0
H A:ARG17 4.5 0.0 1.0
H A:PHE12 4.5 0.0 1.0
CG A:ARG17 4.5 0.0 1.0
HA A:LYS29 4.6 0.0 1.0
HB3 A:ARG17 4.7 0.0 1.0
CB A:PHE12 4.7 0.0 1.0
CA A:CYS15 4.7 0.0 1.0
H A:ASP11 4.7 0.0 1.0
CA A:CYS10 4.7 0.0 1.0
HB2 A:GLN32 4.8 0.0 1.0
HG2 A:ARG17 4.9 0.0 1.0
HA A:CYS15 4.9 0.0 1.0
HA A:CYS10 4.9 0.0 1.0

Zinc binding site 2 out of 2 in 2dlk

Go back to Zinc Binding Sites List in 2dlk
Zinc binding site 2 out of 2 in the Solution Structure of the First and the Second Zf-C2H2 Domains of Zinc Finger Protein 692


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the First and the Second Zf-C2H2 Domains of Zinc Finger Protein 692 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
NE2 A:HIS59 2.0 0.0 1.0
NE2 A:HIS63 2.0 0.0 1.0
SG A:CYS41 2.3 0.0 1.0
SG A:CYS46 2.3 0.0 1.0
CE1 A:HIS59 2.7 0.0 1.0
CD2 A:HIS63 2.8 0.0 1.0
HE1 A:HIS59 2.8 0.0 1.0
HD2 A:HIS63 2.9 0.0 1.0
CD2 A:HIS59 3.1 0.0 1.0
CE1 A:HIS63 3.2 0.0 1.0
CB A:CYS46 3.2 0.0 1.0
HB3 A:CYS46 3.2 0.0 1.0
HB2 A:CYS46 3.3 0.0 1.0
HB2 A:CYS41 3.3 0.0 1.0
CB A:CYS41 3.4 0.0 1.0
HD2 A:HIS59 3.5 0.0 1.0
HB3 A:GLU43 3.5 0.0 1.0
HE1 A:HIS63 3.5 0.0 1.0
HB3 A:CYS41 3.9 0.0 1.0
ND1 A:HIS59 3.9 0.0 1.0
HB3 A:LYS48 4.0 0.0 1.0
CG A:HIS63 4.0 0.0 1.0
HB2 A:LYS48 4.1 0.0 1.0
CG A:HIS59 4.1 0.0 1.0
ND1 A:HIS63 4.2 0.0 1.0
HD2 A:LYS48 4.3 0.0 1.0
HB2 A:GLU43 4.3 0.0 1.0
HD2 A:PRO42 4.3 0.0 1.0
CB A:GLU43 4.4 0.0 1.0
H A:LYS48 4.5 0.0 1.0
CB A:LYS48 4.6 0.0 1.0
H A:GLU43 4.6 0.0 1.0
HE2 A:PHE50 4.6 0.0 1.0
CA A:CYS46 4.7 0.0 1.0
HG2 A:GLU43 4.7 0.0 1.0
CA A:CYS41 4.7 0.0 1.0
HD1 A:HIS59 4.8 0.0 1.0
HA A:CYS41 4.8 0.0 1.0
HA A:CYS46 5.0 0.0 1.0

Reference:

H.P.Zhang, T.Nagashima, F.Hayashi, S.Yokoyama. Solution Structure of the First and the Second Zf-C2H2 Domains of Zinc Finger Protein 692 To Be Published.
Page generated: Sat Sep 26 01:24:38 2020
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy