Zinc in PDB 2djb: Solution Structure of the Ring Domain of the Human Polycomb Group Ring Finger Protein 6

The binding sites of Zinc atom in the Solution Structure of the Ring Domain of the Human Polycomb Group Ring Finger Protein 6 (pdb code 2djb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Ring Domain of the Human Polycomb Group Ring Finger Protein 6, PDB code: 2djb:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of the Ring Domain of the Human Polycomb Group Ring Finger Protein 6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Ring Domain of the Human Polycomb Group Ring Finger Protein 6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 SG A:CYS18 2.3 0.0 1.0 SG A:CYS21 2.3 0.0 1.0 SG A:CYS42 2.3 0.0 1.0 SG A:CYS39 2.4 0.0 1.0 H A:CYS21 2.8 0.0 1.0 HB2 A:CYS39 2.9 0.0 1.0 H A:CYS39 3.0 0.0 1.0 HB A:ILE20 3.1 0.0 1.0 HB2 A:CYS21 3.2 0.0 1.0 CB A:CYS39 3.2 0.0 1.0 HB2 A:CYS42 3.2 0.0 1.0 CB A:CYS21 3.4 0.0 1.0 CB A:CYS42 3.4 0.0 1.0 CB A:CYS18 3.4 0.0 1.0 HB2 A:CYS18 3.5 0.0 1.0 HB3 A:CYS18 3.5 0.0 1.0 N A:CYS21 3.6 0.0 1.0 HB3 A:CYS42 3.7 0.0 1.0 N A:CYS39 3.9 0.0 1.0 HD22 A:LEU25 4.0 0.0 1.0 HB3 A:CYS39 4.0 0.0 1.0 CA A:CYS21 4.1 0.0 1.0 CB A:ILE20 4.2 0.0 1.0 CA A:CYS39 4.2 0.0 1.0 H A:ILE20 4.2 0.0 1.0 HB3 A:CYS21 4.3 0.0 1.0 HG23 A:ILE20 4.3 0.0 1.0 HD1 A:PHE38 4.4 0.0 1.0 HA A:PHE38 4.5 0.0 1.0 HD11 A:ILE20 4.5 0.0 1.0 HD12 A:ILE20 4.5 0.0 1.0 HA A:CYS21 4.7 0.0 1.0 CG2 A:ILE20 4.7 0.0 1.0 C A:ILE20 4.7 0.0 1.0 H A:CYS42 4.7 0.0 1.0 CA A:CYS42 4.7 0.0 1.0 HG22 A:ILE20 4.8 0.0 1.0 HA A:LEU25 4.8 0.0 1.0 CA A:CYS18 4.8 0.0 1.0 CA A:ILE20 4.8 0.0 1.0 CD2 A:LEU25 4.9 0.0 1.0 HA A:CYS39 4.9 0.0 1.0 CD1 A:ILE20 4.9 0.0 1.0 N A:ILE20 4.9 0.0 1.0 H A:LYS22 4.9 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of the Ring Domain of the Human Polycomb Group Ring Finger Protein 6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Ring Domain of the Human Polycomb Group Ring Finger Protein 6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:0.0 occ:1.00 ND1 A:HIS36 2.3 0.0 1.0 SG A:CYS56 2.3 0.0 1.0 SG A:CYS53 2.3 0.0 1.0 SG A:CYS34 2.3 0.0 1.0 H A:CYS56 2.5 0.0 1.0 HB3 A:LYS55 2.6 0.0 1.0 HE1 A:HIS36 2.9 0.0 1.0 CE1 A:HIS36 3.0 0.0 1.0 HB3 A:CYS53 3.0 0.0 1.0 HB2 A:CYS34 3.2 0.0 1.0 CB A:CYS53 3.2 0.0 1.0 CB A:CYS34 3.3 0.0 1.0 N A:CYS56 3.4 0.0 1.0 HD12 A:ILE31 3.4 0.0 1.0 HB3 A:CYS34 3.5 0.0 1.0 CG A:HIS36 3.5 0.0 1.0 CB A:LYS55 3.5 0.0 1.0 HB2 A:HIS36 3.5 0.0 1.0 HD13 A:ILE58 3.5 0.0 1.0 CB A:CYS56 3.5 0.0 1.0 HB2 A:CYS53 3.5 0.0 1.0 HB2 A:LYS55 3.6 0.0 1.0 HB3 A:CYS56 3.6 0.0 1.0 HG12 A:ILE58 3.6 0.0 1.0 HE2 A:PHE38 3.9 0.0 1.0 H A:LYS55 3.9 0.0 1.0 HD3 A:LYS55 3.9 0.0 1.0 CA A:CYS56 4.0 0.0 1.0 CB A:HIS36 4.0 0.0 1.0 H A:ASN57 4.2 0.0 1.0 NE2 A:HIS36 4.2 0.0 1.0 CD1 A:ILE31 4.2 0.0 1.0 C A:LYS55 4.3 0.0 1.0 HD11 A:ILE31 4.3 0.0 1.0 CA A:LYS55 4.3 0.0 1.0 HD13 A:ILE31 4.4 0.0 1.0 CD1 A:ILE58 4.4 0.0 1.0 HB2 A:CYS56 4.4 0.0 1.0 HB3 A:HIS36 4.5 0.0 1.0 CD2 A:HIS36 4.5 0.0 1.0 N A:LYS55 4.5 0.0 1.0 CG1 A:ILE58 4.5 0.0 1.0 CG A:LYS55 4.6 0.0 1.0 H A:ILE58 4.6 0.0 1.0 CA A:CYS53 4.6 0.0 1.0 HG21 A:ILE58 4.7 0.0 1.0 CA A:CYS34 4.7 0.0 1.0 HG3 A:LYS55 4.7 0.0 1.0 CD A:LYS55 4.7 0.0 1.0 HD11 A:ILE58 4.8 0.0 1.0 H A:CYS34 4.8 0.0 1.0 N A:ASN57 4.8 0.0 1.0 HA A:CYS56 4.9 0.0 1.0 CE2 A:PHE38 4.9 0.0 1.0 C A:CYS56 4.9 0.0 1.0 C A:CYS53 4.9 0.0 1.0

K.Miyamoto, T.Kigawa, M.Sato, S.Koshiba, M.Inoue, S.Yokoyama. Solution Structure of the Ring Domain of the Human Polycomb Group Ring Finger Protein 6 To Be Published.