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Zinc in PDB 2dja: Solution Structure of the B-Box Domain of the Human Midline- 2 Protein

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the B-Box Domain of the Human Midline- 2 Protein (pdb code 2dja). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the B-Box Domain of the Human Midline- 2 Protein, PDB code: 2dja:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2dja

Go back to Zinc Binding Sites List in 2dja
Zinc binding site 1 out of 2 in the Solution Structure of the B-Box Domain of the Human Midline- 2 Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the B-Box Domain of the Human Midline- 2 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
ND1 A:HIS24 2.1 0.0 1.0
SG A:CYS44 2.2 0.0 1.0
SG A:CYS41 2.3 0.0 1.0
SG A:CYS21 2.4 0.0 1.0
HE1 A:HIS24 2.6 0.0 1.0
CE1 A:HIS24 2.7 0.0 1.0
H A:CYS41 3.0 0.0 1.0
HB2 A:CYS44 3.2 0.0 1.0
CB A:CYS44 3.3 0.0 1.0
CG A:HIS24 3.3 0.0 1.0
H A:CYS44 3.3 0.0 1.0
CB A:CYS21 3.4 0.0 1.0
HB3 A:CYS41 3.5 0.0 1.0
HB2 A:CYS21 3.5 0.0 1.0
CB A:CYS41 3.5 0.0 1.0
HB3 A:CYS21 3.5 0.0 1.0
HB2 A:HIS24 3.5 0.0 1.0
HB2 A:ASP23 3.6 0.0 1.0
H A:HIS24 3.6 0.0 1.0
N A:CYS44 3.7 0.0 1.0
HB2 A:LEU43 3.8 0.0 1.0
N A:CYS41 3.8 0.0 1.0
CA A:CYS44 3.9 0.0 1.0
NE2 A:HIS24 3.9 0.0 1.0
HA A:CYS44 3.9 0.0 1.0
CB A:HIS24 4.0 0.0 1.0
CA A:CYS41 4.2 0.0 1.0
HB3 A:CYS44 4.2 0.0 1.0
CD2 A:HIS24 4.2 0.0 1.0
N A:HIS24 4.3 0.0 1.0
HB2 A:CYS41 4.4 0.0 1.0
C A:LEU43 4.5 0.0 1.0
HB2 A:GLU27 4.5 0.0 1.0
HB A:ILE40 4.6 0.0 1.0
HA A:ILE40 4.6 0.0 1.0
C A:CYS41 4.6 0.0 1.0
HB3 A:LEU43 4.6 0.0 1.0
CB A:LEU43 4.6 0.0 1.0
CB A:ASP23 4.6 0.0 1.0
H A:ASP23 4.6 0.0 1.0
OD2 A:ASP23 4.6 0.0 1.0
HE2 A:HIS24 4.7 0.0 1.0
H A:LEU43 4.7 0.0 1.0
O A:CYS41 4.8 0.0 1.0
CA A:HIS24 4.8 0.0 1.0
HG11 A:VAL29 4.9 0.0 1.0
HB3 A:HIS24 4.9 0.0 1.0
CA A:CYS21 4.9 0.0 1.0
CA A:LEU43 5.0 0.0 1.0
C A:ILE40 5.0 0.0 1.0
N A:LEU43 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2dja

Go back to Zinc Binding Sites List in 2dja
Zinc binding site 2 out of 2 in the Solution Structure of the B-Box Domain of the Human Midline- 2 Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the B-Box Domain of the Human Midline- 2 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
ND1 A:HIS53 1.9 0.0 1.0
ND1 A:HIS50 2.0 0.0 1.0
OD2 A:ASP36 2.1 0.0 1.0
SG A:CYS33 2.2 0.0 1.0
CE1 A:HIS53 2.8 0.0 1.0
CE1 A:HIS50 2.9 0.0 1.0
HE1 A:HIS53 3.0 0.0 1.0
CG A:HIS53 3.0 0.0 1.0
HB2 A:ASP36 3.0 0.0 1.0
HE1 A:HIS50 3.1 0.0 1.0
HB3 A:HIS50 3.1 0.0 1.0
CG A:ASP36 3.1 0.0 1.0
HB3 A:HIS53 3.1 0.0 1.0
CG A:HIS50 3.1 0.0 1.0
CB A:HIS53 3.5 0.0 1.0
CB A:CYS33 3.5 0.0 1.0
HB2 A:CYS33 3.5 0.0 1.0
CB A:HIS50 3.6 0.0 1.0
HB2 A:HIS53 3.6 0.0 1.0
CB A:ASP36 3.6 0.0 1.0
HA A:HIS50 3.8 0.0 1.0
HB3 A:CYS33 3.8 0.0 1.0
H A:ASP36 3.9 0.0 1.0
NE2 A:HIS53 3.9 0.0 1.0
CD2 A:HIS53 4.0 0.0 1.0
NE2 A:HIS50 4.1 0.0 1.0
OD1 A:ASP36 4.1 0.0 1.0
CD2 A:HIS50 4.2 0.0 1.0
CA A:HIS50 4.3 0.0 1.0
HB3 A:ASP36 4.3 0.0 1.0
HB3 A:SER35 4.4 0.0 1.0
HD13 A:ILE40 4.5 0.0 1.0
HB2 A:HIS50 4.5 0.0 1.0
N A:ASP36 4.5 0.0 1.0
HG23 A:ILE40 4.7 0.0 1.0
CA A:ASP36 4.7 0.0 1.0
HE2 A:HIS53 4.8 0.0 1.0
CA A:CYS33 4.8 0.0 1.0
HA A:CYS33 4.9 0.0 1.0
HE2 A:HIS50 4.9 0.0 1.0
HG11 A:VAL55 4.9 0.0 1.0
CA A:HIS53 4.9 0.0 1.0
N A:HIS50 5.0 0.0 1.0

Reference:

K.Miyamoto, T.Kigawa, T.Tomizawa, S.Koshiba, M.Inoue, S.Yokoyama. Solution Structure of the B-Box Domain of the Human Midline-2 Protein To Be Published.
Page generated: Wed Dec 16 03:21:22 2020

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