Zinc in PDB 2dj8: Solution Structure of Zf-Mynd Domain of Protein CBFA2TI (Protein MTG8)

The binding sites of Zinc atom in the Solution Structure of Zf-Mynd Domain of Protein CBFA2TI (Protein MTG8) (pdb code 2dj8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of Zf-Mynd Domain of Protein CBFA2TI (Protein MTG8), PDB code: 2dj8:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of Zf-Mynd Domain of Protein CBFA2TI (Protein MTG8)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of Zf-Mynd Domain of Protein CBFA2TI (Protein MTG8) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 SG A:CYS18 2.2 0.0 1.0 SG A:CYS38 2.4 0.0 1.0 SG A:CYS21 2.4 0.0 1.0 SG A:CYS42 2.4 0.0 1.0 H A:CYS21 2.7 0.0 1.0 H A:CYS38 2.8 0.0 1.0 HB3 A:ASN20 2.8 0.0 1.0 HD21 A:ASN20 2.9 0.0 1.0 HB2 A:CYS21 3.2 0.0 1.0 HB2 A:CYS42 3.3 0.0 1.0 CB A:CYS42 3.4 0.0 1.0 HB3 A:CYS38 3.4 0.0 1.0 CB A:CYS21 3.4 0.0 1.0 CB A:CYS38 3.5 0.0 1.0 CB A:CYS18 3.5 0.0 1.0 HB3 A:CYS42 3.5 0.0 1.0 N A:CYS21 3.6 0.0 1.0 HB3 A:CYS18 3.6 0.0 1.0 HB2 A:CYS18 3.7 0.0 1.0 N A:CYS38 3.7 0.0 1.0 ND2 A:ASN20 3.9 0.0 1.0 CB A:ASN20 3.9 0.0 1.0 HD1 A:TYR37 3.9 0.0 1.0 CA A:CYS21 4.1 0.0 1.0 HA A:TYR37 4.1 0.0 1.0 CA A:CYS38 4.2 0.0 1.0 H A:GLY22 4.3 0.0 1.0 HB3 A:CYS21 4.3 0.0 1.0 HB2 A:CYS38 4.4 0.0 1.0 HB2 A:ASN20 4.4 0.0 1.0 CG A:ASN20 4.4 0.0 1.0 H A:ASN20 4.6 0.0 1.0 HB3 A:TYR37 4.6 0.0 1.0 C A:ASN20 4.6 0.0 1.0 HD22 A:ASN20 4.6 0.0 1.0 CA A:ASN20 4.7 0.0 1.0 C A:TYR37 4.8 0.0 1.0 CA A:CYS42 4.8 0.0 1.0 HA A:CYS21 4.8 0.0 1.0 H A:GLY39 4.8 0.0 1.0 CA A:TYR37 4.9 0.0 1.0 CA A:CYS18 4.9 0.0 1.0 N A:ASN20 4.9 0.0 1.0 CD1 A:TYR37 4.9 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of Zf-Mynd Domain of Protein CBFA2TI (Protein MTG8)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of Zf-Mynd Domain of Protein CBFA2TI (Protein MTG8) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:0.0 occ:1.00 HE2 A:HIS50 1.3 0.0 1.0 NE2 A:HIS50 2.1 0.0 1.0 SG A:CYS29 2.2 0.0 1.0 SG A:CYS32 2.3 0.0 1.0 SG A:CYS54 2.4 0.0 1.0 HZ3 A:TRP47 2.6 0.0 1.0 HD2 A:HIS50 2.7 0.0 1.0 CD2 A:HIS50 2.7 0.0 1.0 HB3 A:CYS54 3.1 0.0 1.0 CB A:CYS54 3.2 0.0 1.0 CB A:CYS29 3.2 0.0 1.0 HB3 A:CYS29 3.3 0.0 1.0 H A:CYS32 3.3 0.0 1.0 CE1 A:HIS50 3.3 0.0 1.0 HB2 A:CYS54 3.4 0.0 1.0 HB2 A:CYS29 3.4 0.0 1.0 HB3 A:CYS32 3.4 0.0 1.0 CB A:CYS32 3.5 0.0 1.0 HB1 A:ALA35 3.5 0.0 1.0 CZ3 A:TRP47 3.7 0.0 1.0 HE1 A:HIS50 3.7 0.0 1.0 N A:CYS32 3.8 0.0 1.0 CG A:HIS50 4.0 0.0 1.0 H A:ALA35 4.1 0.0 1.0 HA3 A:GLY31 4.2 0.0 1.0 ND1 A:HIS50 4.2 0.0 1.0 H A:GLY31 4.2 0.0 1.0 CA A:CYS32 4.3 0.0 1.0 HH2 A:TRP47 4.3 0.0 1.0 H A:ASN33 4.4 0.0 1.0 HB2 A:CYS32 4.4 0.0 1.0 HA A:HIS51 4.4 0.0 1.0 H A:THR34 4.4 0.0 1.0 HE3 A:TRP47 4.4 0.0 1.0 CB A:ALA35 4.5 0.0 1.0 CH2 A:TRP47 4.5 0.0 1.0 C A:GLY31 4.6 0.0 1.0 CE3 A:TRP47 4.6 0.0 1.0 HB3 A:ALA35 4.6 0.0 1.0 CA A:CYS29 4.7 0.0 1.0 CA A:CYS54 4.7 0.0 1.0 CA A:GLY31 4.7 0.0 1.0 HA2 A:GLY56 4.8 0.0 1.0 HB A:THR34 4.8 0.0 1.0 N A:GLY31 4.9 0.0 1.0 H A:CYS54 4.9 0.0 1.0 N A:ASN33 5.0 0.0 1.0 N A:ALA35 5.0 0.0 1.0

T.N.Niraula, A.Sasagawa, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama. Solution Structure of Zf-Mynd Domain of Protein CBFA2TI (Protein MTG8) To Be Published.