Zinc in PDB 2dar: Solution Structure of First Lim Domain of Enigma-Like Pdz and Lim Domains Protein

The binding sites of Zinc atom in the Solution Structure of First Lim Domain of Enigma-Like Pdz and Lim Domains Protein (pdb code 2dar). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of First Lim Domain of Enigma-Like Pdz and Lim Domains Protein, PDB code: 2dar:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of First Lim Domain of Enigma-Like Pdz and Lim Domains Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of First Lim Domain of Enigma-Like Pdz and Lim Domains Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 OE1 A:GLU51 2.0 0.0 1.0 ND1 A:HIS48 2.0 0.0 1.0 SG A:CYS31 2.4 0.0 1.0 SG A:CYS28 2.4 0.0 1.0 HB2 A:HIS48 2.7 0.0 1.0 H A:CYS31 2.8 0.0 1.0 CD A:GLU51 2.9 0.0 1.0 HB3 A:CYS31 3.0 0.0 1.0 CG A:HIS48 3.0 0.0 1.0 CE1 A:HIS48 3.0 0.0 1.0 OE2 A:GLU51 3.1 0.0 1.0 CB A:CYS31 3.3 0.0 1.0 HE1 A:HIS48 3.3 0.0 1.0 CB A:CYS28 3.3 0.0 1.0 CB A:HIS48 3.3 0.0 1.0 HB2 A:CYS28 3.4 0.0 1.0 HB3 A:CYS28 3.4 0.0 1.0 H A:HIS48 3.6 0.0 1.0 HB3 A:HIS30 3.6 0.0 1.0 N A:CYS31 3.7 0.0 1.0 HD2 A:HIS30 3.9 0.0 1.0 H A:ASN32 4.1 0.0 1.0 CA A:CYS31 4.1 0.0 1.0 HB3 A:HIS48 4.1 0.0 1.0 HB2 A:GLU51 4.1 0.0 1.0 HB2 A:CYS31 4.1 0.0 1.0 NE2 A:HIS48 4.1 0.0 1.0 N A:HIS48 4.2 0.0 1.0 CD2 A:HIS48 4.2 0.0 1.0 CG A:GLU51 4.2 0.0 1.0 H A:HIS30 4.4 0.0 1.0 CA A:HIS48 4.4 0.0 1.0 H A:GLN33 4.4 0.0 1.0 HG3 A:GLU51 4.6 0.0 1.0 CB A:HIS30 4.6 0.0 1.0 N A:ASN32 4.7 0.0 1.0 HA A:TRP47 4.7 0.0 1.0 H A:ALA29 4.7 0.0 1.0 CB A:GLU51 4.7 0.0 1.0 CD2 A:HIS30 4.7 0.0 1.0 HB2 A:GLN33 4.7 0.0 1.0 CA A:CYS28 4.8 0.0 1.0 C A:CYS31 4.8 0.0 1.0 C A:HIS30 4.8 0.0 1.0 HA A:HIS48 4.9 0.0 1.0 N A:HIS30 4.9 0.0 1.0 HA A:CYS31 4.9 0.0 1.0 HG2 A:GLU51 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of First Lim Domain of Enigma-Like Pdz and Lim Domains Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of First Lim Domain of Enigma-Like Pdz and Lim Domains Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:0.0 occ:1.00 SG A:CYS57 2.3 0.0 1.0 SG A:CYS54 2.3 0.0 1.0 SG A:CYS75 2.3 0.0 1.0 SG A:CYS78 2.3 0.0 1.0 H A:CYS75 2.8 0.0 1.0 HB2 A:CYS78 3.2 0.0 1.0 H A:CYS57 3.2 0.0 1.0 HB3 A:CYS57 3.3 0.0 1.0 HB2 A:CYS54 3.3 0.0 1.0 CB A:CYS54 3.4 0.0 1.0 CB A:CYS78 3.4 0.0 1.0 HB3 A:CYS75 3.4 0.0 1.0 CB A:CYS57 3.5 0.0 1.0 CB A:CYS75 3.5 0.0 1.0 HB3 A:CYS54 3.5 0.0 1.0 H A:CYS78 3.5 0.0 1.0 N A:CYS75 3.6 0.0 1.0 N A:CYS57 4.0 0.0 1.0 HB3 A:HIS56 4.0 0.0 1.0 HA A:TYR74 4.0 0.0 1.0 CA A:CYS75 4.1 0.0 1.0 HB3 A:CYS78 4.1 0.0 1.0 HB2 A:LEU77 4.2 0.0 1.0 HB2 A:CYS57 4.3 0.0 1.0 N A:CYS78 4.3 0.0 1.0 CA A:CYS57 4.3 0.0 1.0 H A:HIS56 4.3 0.0 1.0 HB2 A:CYS75 4.4 0.0 1.0 CA A:CYS78 4.4 0.0 1.0 HB2 A:ASN59 4.5 0.0 1.0 O A:CYS75 4.5 0.0 1.0 HD1 A:TYR74 4.6 0.0 1.0 H A:ASN59 4.7 0.0 1.0 C A:TYR74 4.7 0.0 1.0 HD21 A:ASN59 4.7 0.0 1.0 C A:CYS75 4.8 0.0 1.0 H A:ALA55 4.8 0.0 1.0 CA A:CYS54 4.8 0.0 1.0 HA A:CYS78 4.8 0.0 1.0 HD12 A:LEU77 4.8 0.0 1.0 HB3 A:TYR74 4.8 0.0 1.0 CA A:TYR74 4.8 0.0 1.0 H A:LYS58 4.9 0.0 1.0 HA A:CYS54 5.0 0.0 1.0

T.N.Niraula, Y.Muto, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama. Solution Structure of First Lim Domain of Enigma-Like Pdz and Lim Domains Protein To Be Published.