Atomistry » Zinc » PDB 2ctc-2dan » 2d9n
Atomistry »
  Zinc »
    PDB 2ctc-2dan »
      2d9n »

Zinc in PDB 2d9n: Solution Structure of Ccch Type Zinc-Finger Domain 2 in Cleavage and Polyadenylation Specificity Factor

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of Ccch Type Zinc-Finger Domain 2 in Cleavage and Polyadenylation Specificity Factor (pdb code 2d9n). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of Ccch Type Zinc-Finger Domain 2 in Cleavage and Polyadenylation Specificity Factor, PDB code: 2d9n:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2d9n

Go back to Zinc Binding Sites List in 2d9n
Zinc binding site 1 out of 2 in the Solution Structure of Ccch Type Zinc-Finger Domain 2 in Cleavage and Polyadenylation Specificity Factor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of Ccch Type Zinc-Finger Domain 2 in Cleavage and Polyadenylation Specificity Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn256

b:0.0
occ:1.00
SG A:CYS76 2.3 0.0 1.0
SG A:CYS82 2.3 0.0 1.0
NE2 A:HIS86 2.3 0.0 1.0
SG A:CYS68 2.4 0.0 1.0
HB2 A:CYS82 3.0 0.0 1.0
CE1 A:HIS86 3.2 0.0 1.0
HB2 A:CYS68 3.2 0.0 1.0
HE1 A:HIS86 3.2 0.0 1.0
CB A:CYS68 3.2 0.0 1.0
CB A:CYS82 3.2 0.0 1.0
CB A:CYS76 3.3 0.0 1.0
HB2 A:CYS76 3.4 0.0 1.0
HB2 A:TRP71 3.4 0.0 1.0
HB3 A:CYS68 3.4 0.0 1.0
HB3 A:CYS76 3.4 0.0 1.0
CD2 A:HIS86 3.4 0.0 1.0
H A:TRP71 3.6 0.0 1.0
HB2 A:HIS70 3.7 0.0 1.0
HD2 A:HIS86 3.7 0.0 1.0
HB3 A:CYS82 3.7 0.0 1.0
HB2 A:LYS78 3.8 0.0 1.0
HD3 A:LYS78 3.9 0.0 1.0
HB3 A:TRP71 3.9 0.0 1.0
CB A:TRP71 4.1 0.0 1.0
ND1 A:HIS86 4.3 0.0 1.0
N A:TRP71 4.4 0.0 1.0
H A:GLY79 4.4 0.0 1.0
HB2 A:PHE84 4.4 0.0 1.0
CG A:HIS86 4.5 0.0 1.0
CA A:CYS82 4.6 0.0 1.0
HA A:CYS82 4.6 0.0 1.0
H A:LYS78 4.6 0.0 1.0
HG3 A:LYS78 4.6 0.0 1.0
CA A:CYS68 4.7 0.0 1.0
H A:PHE84 4.7 0.0 1.0
H A:HIS70 4.7 0.0 1.0
CA A:CYS76 4.8 0.0 1.0
CA A:TRP71 4.8 0.0 1.0
CB A:LYS78 4.8 0.0 1.0
CB A:HIS70 4.8 0.0 1.0
CD A:LYS78 4.8 0.0 1.0
H A:GLU83 4.8 0.0 1.0
HA A:CYS68 4.9 0.0 1.0
HA A:TRP71 4.9 0.0 1.0
HA A:CYS76 5.0 0.0 1.0
CG A:LYS78 5.0 0.0 1.0
HD1 A:PHE84 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2d9n

Go back to Zinc Binding Sites List in 2d9n
Zinc binding site 2 out of 2 in the Solution Structure of Ccch Type Zinc-Finger Domain 2 in Cleavage and Polyadenylation Specificity Factor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of Ccch Type Zinc-Finger Domain 2 in Cleavage and Polyadenylation Specificity Factor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn456

b:0.0
occ:1.00
SG A:CYS96 2.3 0.0 1.0
SG A:CYS110 2.4 0.0 1.0
SG A:CYS105 2.4 0.0 1.0
NE2 A:HIS114 2.4 0.0 1.0
HB2 A:CYS96 3.1 0.0 1.0
CE1 A:HIS114 3.2 0.0 1.0
CB A:CYS105 3.3 0.0 1.0
CD2 A:HIS114 3.3 0.0 1.0
HB3 A:CYS105 3.3 0.0 1.0
CB A:CYS96 3.3 0.0 1.0
HB2 A:CYS105 3.4 0.0 1.0
HE1 A:HIS114 3.4 0.0 1.0
CB A:CYS110 3.5 0.0 1.0
HB2 A:CYS110 3.5 0.0 1.0
HD2 A:HIS114 3.5 0.0 1.0
HB2 A:PHE112 3.6 0.0 1.0
HB2 A:ASN107 3.6 0.0 1.0
HB3 A:CYS110 3.6 0.0 1.0
HB3 A:CYS96 3.7 0.0 1.0
HB2 A:TYR99 3.8 0.0 1.0
HD2 A:PHE98 3.8 0.0 1.0
HD21 A:ASN107 3.8 0.0 1.0
HB2 A:PHE98 4.0 0.0 1.0
H A:TYR99 4.2 0.0 1.0
ND1 A:HIS114 4.3 0.0 1.0
CG A:HIS114 4.4 0.0 1.0
ND2 A:ASN107 4.4 0.0 1.0
HD2 A:PHE112 4.5 0.0 1.0
CB A:ASN107 4.5 0.0 1.0
CB A:PHE112 4.5 0.0 1.0
HB3 A:PHE112 4.6 0.0 1.0
CA A:CYS96 4.7 0.0 1.0
H A:PHE112 4.7 0.0 1.0
HA A:CYS96 4.8 0.0 1.0
CA A:CYS105 4.8 0.0 1.0
CG A:ASN107 4.8 0.0 1.0
HB3 A:ASN107 4.8 0.0 1.0
CB A:TYR99 4.8 0.0 1.0
CD2 A:PHE98 4.9 0.0 1.0
HD2 A:TYR99 4.9 0.0 1.0
CA A:CYS110 4.9 0.0 1.0
HD22 A:ASN107 5.0 0.0 1.0

Reference:

C.Abe, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirouzu, S.Yokoyama. Solution Structure of Ccch Type Zinc-Finger Domain 2 in Cleavage and Polyadenylation Specificity Factor To Be Published.
Page generated: Wed Dec 16 03:20:53 2020

Last articles

Zn in 8PFC
Zn in 8SF0
Zn in 8SOJ
Zn in 8SOK
Zn in 8SYI
Zn in 8SLG
Zn in 8SEX
Zn in 8SEZ
Zn in 8SJG
Zn in 8SEY
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy