Zinc in PDB 2d9n: Solution Structure of Ccch Type Zinc-Finger Domain 2 in Cleavage and Polyadenylation Specificity Factor

The binding sites of Zinc atom in the Solution Structure of Ccch Type Zinc-Finger Domain 2 in Cleavage and Polyadenylation Specificity Factor (pdb code 2d9n). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of Ccch Type Zinc-Finger Domain 2 in Cleavage and Polyadenylation Specificity Factor, PDB code: 2d9n:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of Ccch Type Zinc-Finger Domain 2 in Cleavage and Polyadenylation Specificity Factor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of Ccch Type Zinc-Finger Domain 2 in Cleavage and Polyadenylation Specificity Factor within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn256 b:0.0 occ:1.00 SG A:CYS76 2.3 0.0 1.0 SG A:CYS82 2.3 0.0 1.0 NE2 A:HIS86 2.3 0.0 1.0 SG A:CYS68 2.4 0.0 1.0 HB2 A:CYS82 3.0 0.0 1.0 CE1 A:HIS86 3.2 0.0 1.0 HB2 A:CYS68 3.2 0.0 1.0 HE1 A:HIS86 3.2 0.0 1.0 CB A:CYS68 3.2 0.0 1.0 CB A:CYS82 3.2 0.0 1.0 CB A:CYS76 3.3 0.0 1.0 HB2 A:CYS76 3.4 0.0 1.0 HB2 A:TRP71 3.4 0.0 1.0 HB3 A:CYS68 3.4 0.0 1.0 HB3 A:CYS76 3.4 0.0 1.0 CD2 A:HIS86 3.4 0.0 1.0 H A:TRP71 3.6 0.0 1.0 HB2 A:HIS70 3.7 0.0 1.0 HD2 A:HIS86 3.7 0.0 1.0 HB3 A:CYS82 3.7 0.0 1.0 HB2 A:LYS78 3.8 0.0 1.0 HD3 A:LYS78 3.9 0.0 1.0 HB3 A:TRP71 3.9 0.0 1.0 CB A:TRP71 4.1 0.0 1.0 ND1 A:HIS86 4.3 0.0 1.0 N A:TRP71 4.4 0.0 1.0 H A:GLY79 4.4 0.0 1.0 HB2 A:PHE84 4.4 0.0 1.0 CG A:HIS86 4.5 0.0 1.0 CA A:CYS82 4.6 0.0 1.0 HA A:CYS82 4.6 0.0 1.0 H A:LYS78 4.6 0.0 1.0 HG3 A:LYS78 4.6 0.0 1.0 CA A:CYS68 4.7 0.0 1.0 H A:PHE84 4.7 0.0 1.0 H A:HIS70 4.7 0.0 1.0 CA A:CYS76 4.8 0.0 1.0 CA A:TRP71 4.8 0.0 1.0 CB A:LYS78 4.8 0.0 1.0 CB A:HIS70 4.8 0.0 1.0 CD A:LYS78 4.8 0.0 1.0 H A:GLU83 4.8 0.0 1.0 HA A:CYS68 4.9 0.0 1.0 HA A:TRP71 4.9 0.0 1.0 HA A:CYS76 5.0 0.0 1.0 CG A:LYS78 5.0 0.0 1.0 HD1 A:PHE84 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of Ccch Type Zinc-Finger Domain 2 in Cleavage and Polyadenylation Specificity Factor


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of Ccch Type Zinc-Finger Domain 2 in Cleavage and Polyadenylation Specificity Factor within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn456 b:0.0 occ:1.00 SG A:CYS96 2.3 0.0 1.0 SG A:CYS110 2.4 0.0 1.0 SG A:CYS105 2.4 0.0 1.0 NE2 A:HIS114 2.4 0.0 1.0 HB2 A:CYS96 3.1 0.0 1.0 CE1 A:HIS114 3.2 0.0 1.0 CB A:CYS105 3.3 0.0 1.0 CD2 A:HIS114 3.3 0.0 1.0 HB3 A:CYS105 3.3 0.0 1.0 CB A:CYS96 3.3 0.0 1.0 HB2 A:CYS105 3.4 0.0 1.0 HE1 A:HIS114 3.4 0.0 1.0 CB A:CYS110 3.5 0.0 1.0 HB2 A:CYS110 3.5 0.0 1.0 HD2 A:HIS114 3.5 0.0 1.0 HB2 A:PHE112 3.6 0.0 1.0 HB2 A:ASN107 3.6 0.0 1.0 HB3 A:CYS110 3.6 0.0 1.0 HB3 A:CYS96 3.7 0.0 1.0 HB2 A:TYR99 3.8 0.0 1.0 HD2 A:PHE98 3.8 0.0 1.0 HD21 A:ASN107 3.8 0.0 1.0 HB2 A:PHE98 4.0 0.0 1.0 H A:TYR99 4.2 0.0 1.0 ND1 A:HIS114 4.3 0.0 1.0 CG A:HIS114 4.4 0.0 1.0 ND2 A:ASN107 4.4 0.0 1.0 HD2 A:PHE112 4.5 0.0 1.0 CB A:ASN107 4.5 0.0 1.0 CB A:PHE112 4.5 0.0 1.0 HB3 A:PHE112 4.6 0.0 1.0 CA A:CYS96 4.7 0.0 1.0 H A:PHE112 4.7 0.0 1.0 HA A:CYS96 4.8 0.0 1.0 CA A:CYS105 4.8 0.0 1.0 CG A:ASN107 4.8 0.0 1.0 HB3 A:ASN107 4.8 0.0 1.0 CB A:TYR99 4.8 0.0 1.0 CD2 A:PHE98 4.9 0.0 1.0 HD2 A:TYR99 4.9 0.0 1.0 CA A:CYS110 4.9 0.0 1.0 HD22 A:ASN107 5.0 0.0 1.0

C.Abe, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirouzu, S.Yokoyama. Solution Structure of Ccch Type Zinc-Finger Domain 2 in Cleavage and Polyadenylation Specificity Factor To Be Published.