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Zinc in PDB 2d8z: Solution Structure of the Third Lim Domain of Four and A Half Lim Domains Protein 2 (Fhl-2)

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the Third Lim Domain of Four and A Half Lim Domains Protein 2 (Fhl-2) (pdb code 2d8z). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Third Lim Domain of Four and A Half Lim Domains Protein 2 (Fhl-2), PDB code: 2d8z:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2d8z

Go back to Zinc Binding Sites List in 2d8z
Zinc binding site 1 out of 2 in the Solution Structure of the Third Lim Domain of Four and A Half Lim Domains Protein 2 (Fhl-2)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Third Lim Domain of Four and A Half Lim Domains Protein 2 (Fhl-2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
ND1 A:HIS28 2.1 0.0 1.0
SG A:CYS11 2.2 0.0 1.0
SG A:CYS31 2.3 0.0 1.0
SG A:CYS8 2.4 0.0 1.0
HB2 A:HIS28 2.7 0.0 1.0
H A:CYS11 2.8 0.0 1.0
CG A:HIS28 3.0 0.0 1.0
CE1 A:HIS28 3.0 0.0 1.0
HB3 A:CYS8 3.1 0.0 1.0
CB A:CYS8 3.2 0.0 1.0
HB3 A:GLN10 3.2 0.0 1.0
HB2 A:CYS8 3.3 0.0 1.0
HE1 A:HIS28 3.3 0.0 1.0
CB A:HIS28 3.4 0.0 1.0
HB2 A:CYS31 3.4 0.0 1.0
CB A:CYS31 3.5 0.0 1.0
CB A:CYS11 3.5 0.0 1.0
HB3 A:CYS11 3.6 0.0 1.0
N A:CYS11 3.7 0.0 1.0
H A:HIS28 3.8 0.0 1.0
HB3 A:CYS31 3.8 0.0 1.0
HB2 A:LYS13 3.9 0.0 1.0
HB3 A:HIS28 4.0 0.0 1.0
NE2 A:HIS28 4.1 0.0 1.0
CD2 A:HIS28 4.1 0.0 1.0
CA A:CYS11 4.2 0.0 1.0
H A:LYS13 4.2 0.0 1.0
CB A:GLN10 4.3 0.0 1.0
H A:LYS12 4.3 0.0 1.0
HB2 A:CYS11 4.4 0.0 1.0
N A:HIS28 4.5 0.0 1.0
H A:GLN10 4.5 0.0 1.0
CA A:HIS28 4.5 0.0 1.0
CA A:CYS8 4.7 0.0 1.0
HB2 A:GLN10 4.7 0.0 1.0
C A:GLN10 4.8 0.0 1.0
CA A:CYS31 4.8 0.0 1.0
N A:LYS12 4.8 0.0 1.0
H A:CYS31 4.8 0.0 1.0
CA A:GLN10 4.9 0.0 1.0
C A:CYS11 4.9 0.0 1.0
HG2 A:GLN10 4.9 0.0 1.0
N A:GLN10 4.9 0.0 1.0
CB A:LYS13 4.9 0.0 1.0
HG3 A:GLN10 5.0 0.0 1.0
HE2 A:HIS28 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2d8z

Go back to Zinc Binding Sites List in 2d8z
Zinc binding site 2 out of 2 in the Solution Structure of the Third Lim Domain of Four and A Half Lim Domains Protein 2 (Fhl-2)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Third Lim Domain of Four and A Half Lim Domains Protein 2 (Fhl-2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
SG A:CYS55 2.3 0.0 1.0
SG A:CYS58 2.4 0.0 1.0
SG A:CYS37 2.4 0.0 1.0
SG A:CYS34 2.4 0.0 1.0
HB2 A:CYS58 2.8 0.0 1.0
HB2 A:CYS34 3.1 0.0 1.0
CB A:CYS58 3.2 0.0 1.0
CB A:CYS34 3.2 0.0 1.0
H A:CYS37 3.3 0.0 1.0
H A:CYS55 3.3 0.0 1.0
H A:CYS58 3.3 0.0 1.0
HB3 A:CYS34 3.4 0.0 1.0
HB3 A:CYS37 3.4 0.0 1.0
HB3 A:CYS55 3.5 0.0 1.0
CB A:CYS37 3.5 0.0 1.0
CB A:CYS55 3.5 0.0 1.0
HB2 A:LYS39 3.8 0.0 1.0
HB3 A:CYS58 3.9 0.0 1.0
N A:CYS37 3.9 0.0 1.0
N A:CYS55 4.0 0.0 1.0
HB2 A:ASN57 4.0 0.0 1.0
N A:CYS58 4.1 0.0 1.0
HB2 A:ALA36 4.1 0.0 1.0
H A:ALA36 4.1 0.0 1.0
HD3 A:LYS39 4.1 0.0 1.0
CA A:CYS58 4.2 0.0 1.0
CA A:CYS55 4.3 0.0 1.0
CA A:CYS37 4.3 0.0 1.0
HD21 A:ASN57 4.3 0.0 1.0
O A:CYS55 4.4 0.0 1.0
HB2 A:CYS37 4.4 0.0 1.0
HB2 A:CYS55 4.4 0.0 1.0
HB1 A:ALA36 4.4 0.0 1.0
H A:LYS39 4.4 0.0 1.0
HA A:TYR54 4.5 0.0 1.0
CA A:CYS34 4.7 0.0 1.0
HA A:CYS58 4.7 0.0 1.0
CB A:ALA36 4.7 0.0 1.0
H A:ARG38 4.7 0.0 1.0
C A:CYS55 4.7 0.0 1.0
HD22 A:LEU41 4.8 0.0 1.0
HG3 A:LYS39 4.8 0.0 1.0
H A:THR35 4.8 0.0 1.0
CB A:LYS39 4.9 0.0 1.0
C A:ALA36 4.9 0.0 1.0
HA A:CYS34 4.9 0.0 1.0
N A:ALA36 4.9 0.0 1.0
C A:TYR54 5.0 0.0 1.0
C A:CYS37 5.0 0.0 1.0

Reference:

X.R.Qin, F.Hayashi, S.Yokoyama. Solution Structure of the Third Lim Domain of Four and A Half Lim Domains Protein 2 (Fhl-2) To Be Published.
Page generated: Wed Dec 16 03:20:47 2020

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