Zinc in PDB 2c36: Structure of Unliganded Hsv Gd Reveals A Mechanism For Receptor- Mediated Activation of Virus Entry

The structure of Structure of Unliganded Hsv Gd Reveals A Mechanism For Receptor- Mediated Activation of Virus Entry, PDB code: 2c36 was solved by C.Krummenacher, V.M.Supekar, J.C.Whitbeck, E.Lazear, S.A.Connolly, R.J.Eisenberg, G.H.Cohen, D.C.Wiley, A.Carfi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	81.65 / 2.11
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	74.252, 106.193, 130.315, 90.00, 90.00, 90.00
R / Rfree (%)	19.4 / 24.7

The structure of Structure of Unliganded Hsv Gd Reveals A Mechanism For Receptor- Mediated Activation of Virus Entry also contains other interesting chemical elements:

Chlorine

(Cl)

3 atoms

The binding sites of Zinc atom in the Structure of Unliganded Hsv Gd Reveals A Mechanism For Receptor- Mediated Activation of Virus Entry (pdb code 2c36). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Unliganded Hsv Gd Reveals A Mechanism For Receptor- Mediated Activation of Virus Entry, PDB code: 2c36:

Zinc binding site 1 out of 1 in the Structure of Unliganded Hsv Gd Reveals A Mechanism For Receptor- Mediated Activation of Virus Entry


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Unliganded Hsv Gd Reveals A Mechanism For Receptor- Mediated Activation of Virus Entry within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1311 b:38.5 occ:1.00 OD2 B:ASP215 1.9 33.6 1.0 OD2 A:ASP215 1.9 33.5 1.0 NE2 A:HIS39 2.0 42.6 1.0 NE2 B:HIS39 2.1 45.6 1.0 CG B:ASP215 2.7 34.6 1.0 OD1 B:ASP215 2.8 34.5 1.0 CE1 A:HIS39 2.8 44.8 1.0 CG A:ASP215 2.8 35.9 1.0 OD1 A:ASP215 2.9 35.4 1.0 CE1 B:HIS39 3.0 47.4 1.0 CD2 A:HIS39 3.1 44.1 1.0 CD2 B:HIS39 3.1 45.8 1.0 NH2 A:ARG134 3.9 36.2 1.0 ND1 A:HIS39 4.0 44.4 1.0 NH2 B:ARG134 4.0 34.8 1.0 ND1 B:HIS39 4.1 46.4 1.0 CG A:HIS39 4.1 41.9 1.0 CG B:HIS39 4.2 42.4 1.0 CB B:ASP215 4.2 35.4 1.0 CB A:ASP215 4.3 36.0 1.0 CB B:TYR38 4.6 39.2 1.0 O B:HOH2171 4.7 43.8 1.0 CB A:TYR38 4.7 39.6 1.0 O A:HOH2197 4.8 41.4 1.0 NH1 A:ARG134 4.9 35.8 1.0 CZ A:ARG134 4.9 36.3 1.0 CZ B:ARG134 5.0 36.0 1.0 NH1 B:ARG134 5.0 38.9 1.0

C.Krummenacher, V.M.Supekar, J.C.Whitbeck, E.Lazear, S.A.Connolly, R.J.Eisenberg, G.H.Cohen, D.C.Wiley, A.Carfi. Structure of Unliganded Hsv Gd Reveals A Mechanism For Receptor-Mediated Activation of Virus Entry. Embo J. V. 24 4144 2005.
ISSN: ISSN 0261-4189
PubMed: 16292345
DOI: 10.1038/SJ.EMBOJ.7600875