Atomistry » Zinc » PDB 2bn7-2c6n » 2bp0
Atomistry »
  Zinc »
    PDB 2bn7-2c6n »
      2bp0 »

Zinc in PDB 2bp0: M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans

Protein crystallography data

The structure of M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans, PDB code: 2bp0 was solved by M.A.Hough, M.J.Ellis, S.Antonyuk, R.W.Strange, G.Sawers, R.R.Eady, S.S.Hasnain, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 70.00 / 1.90
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 90.605, 90.605, 291.439, 90.00, 90.00, 120.00
R / Rfree (%) 15.9 / 19.6

Other elements in 2bp0:

The structure of M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans also contains other interesting chemical elements:

Copper (Cu) 4 atoms

Zinc Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Zinc atom in the M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans (pdb code 2bp0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 11 binding sites of Zinc where determined in the M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans, PDB code: 2bp0:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 11 in 2bp0

Go back to Zinc Binding Sites List in 2bp0
Zinc binding site 1 out of 11 in the M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1339

b:31.7
occ:1.00
O A:HOH2410 1.9 22.9 1.0
OD2 A:ASP167 2.0 21.6 1.0
NE2 A:HIS165 2.1 23.7 1.0
OD1 A:ASP167 2.8 24.9 1.0
CG A:ASP167 2.8 22.8 1.0
CD2 A:HIS165 3.1 26.6 1.0
CE1 A:HIS165 3.1 24.1 1.0
OG1 A:THR234 4.0 22.6 1.0
ND1 A:HIS165 4.2 24.7 1.0
CG A:HIS165 4.2 23.4 1.0
CB A:ASP167 4.3 23.8 1.0
N A:THR234 4.3 22.1 1.0
CB A:THR234 4.3 21.9 1.0
O A:GLY232 4.4 24.8 1.0
N A:ASP167 4.8 22.7 1.0
CA A:THR234 4.9 21.9 1.0

Zinc binding site 2 out of 11 in 2bp0

Go back to Zinc Binding Sites List in 2bp0
Zinc binding site 2 out of 11 in the M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1340

b:40.8
occ:0.75
O A:HOH2411 2.1 41.6 1.0
OD2 A:ASP73 2.1 25.5 1.0
O A:HOH2412 2.2 38.6 1.0
ND1 A:HIS70 2.6 27.7 1.0
CG A:ASP73 3.0 25.6 1.0
OD1 A:ASP73 3.2 28.1 1.0
CG A:HIS70 3.3 24.2 1.0
CB A:HIS70 3.4 24.0 1.0
CE1 A:HIS70 3.6 27.7 1.0
N A:HIS70 3.7 23.8 1.0
CA A:HIS70 4.2 23.6 1.0
CB A:ASP73 4.4 24.1 1.0
CD2 A:HIS70 4.5 23.7 1.0
NH1 A:ARG153 4.5 40.1 1.0
NH2 A:ARG153 4.6 36.9 1.0
C A:VAL69 4.6 22.9 1.0
O A:HOH2124 4.6 39.5 1.0
NE2 A:HIS70 4.6 27.3 1.0
CG2 A:VAL33 4.8 28.6 1.0
CA A:VAL69 4.8 22.1 1.0
O A:HIS70 4.9 24.0 1.0
CD A:LYS31 5.0 37.0 1.0
CZ A:ARG153 5.0 38.1 1.0
C A:HIS70 5.0 23.3 1.0

Zinc binding site 3 out of 11 in 2bp0

Go back to Zinc Binding Sites List in 2bp0
Zinc binding site 3 out of 11 in the M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1341

b:42.5
occ:1.00
O2 A:SO41345 1.7 50.7 1.0
O4 A:SO41346 2.0 45.0 1.0
NE2 A:HIS313 2.1 30.5 1.0
O A:HOH2413 2.5 23.7 1.0
S A:SO41345 2.9 50.4 1.0
CE1 A:HIS313 2.9 30.5 1.0
S A:SO41346 3.1 39.5 1.0
CD2 A:HIS313 3.1 28.3 1.0
O2 A:SO41346 3.2 45.4 1.0
O4 A:SO41345 3.3 54.2 1.0
O3 A:SO41345 3.7 54.3 1.0
O A:HOH2425 3.7 61.4 1.0
O3 A:SO41346 3.8 45.0 1.0
O A:HOH2426 3.8 57.4 1.0
O A:HOH2420 3.8 63.6 1.0
O1 A:SO41345 4.0 52.2 1.0
ND1 A:HIS313 4.1 29.9 1.0
CG A:HIS313 4.2 25.4 1.0
O1 A:SO41346 4.3 45.1 1.0

Zinc binding site 4 out of 11 in 2bp0

Go back to Zinc Binding Sites List in 2bp0
Zinc binding site 4 out of 11 in the M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1342

b:40.3
occ:0.25
O A:HOH2414 1.9 44.4 1.0
O A:HOH2416 2.0 49.1 1.0
O A:HOH2415 2.0 49.8 1.0
OE1 A:GLU34 2.0 39.7 1.0
ND1 A:HIS8 2.4 41.9 1.0
CD A:GLU34 3.0 36.0 1.0
CG A:HIS8 3.2 39.4 1.0
CE1 A:HIS8 3.3 39.9 1.0
O A:HOH2066 3.4 68.9 1.0
CB A:HIS8 3.4 38.4 1.0
OE2 A:GLU34 3.5 37.8 1.0
CD2 A:HIS8 4.3 40.4 1.0
NE2 A:HIS8 4.3 41.2 1.0
CG A:GLU34 4.3 30.4 1.0
O A:HOH2144 4.4 48.0 1.0
CA A:HIS8 5.0 38.5 1.0

Zinc binding site 5 out of 11 in 2bp0

Go back to Zinc Binding Sites List in 2bp0
Zinc binding site 5 out of 11 in the M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1343

b:38.9
occ:0.25
O A:HOH2418 1.8 39.7 0.5
NE2 A:HIS8 1.9 41.2 1.0
O A:HOH2417 2.0 43.8 0.5
CE1 A:HIS8 2.8 39.9 1.0
CD2 A:HIS8 2.9 40.4 1.0
O A:ASP4 3.0 52.7 1.0
C A:ASP4 3.5 52.3 1.0
CA A:ASP4 3.6 53.9 1.0
ND1 A:HIS8 3.9 41.9 1.0
O A:LEU6 3.9 38.4 1.0
CG A:HIS8 4.0 39.4 1.0
O A:ALA3 4.1 54.2 1.0
CB A:ASP4 4.2 54.1 1.0
O A:HOH2197 4.4 34.6 1.0
N A:LYS5 4.6 50.2 1.0
N A:ASP4 4.7 54.4 1.0
O A:HOH2058 4.7 49.1 1.0
C A:ALA3 4.8 54.9 1.0
N A:LEU6 4.9 43.2 1.0
CG2 A:VAL32 5.0 30.7 1.0

Zinc binding site 6 out of 11 in 2bp0

Go back to Zinc Binding Sites List in 2bp0
Zinc binding site 6 out of 11 in the M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1344

b:68.2
occ:0.75
O A:HOH2419 2.1 20.1 1.0
OE2 A:GLU307 2.2 29.8 1.0
CD A:GLU307 3.3 25.4 1.0
O A:HOH2377 3.3 56.6 1.0
CG A:GLU307 3.8 21.5 1.0
OE1 A:GLU307 4.3 27.0 1.0

Zinc binding site 7 out of 11 in 2bp0

Go back to Zinc Binding Sites List in 2bp0
Zinc binding site 7 out of 11 in the M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1339

b:46.9
occ:0.75
OD2 B:ASP73 2.0 28.8 1.0
O B:HOH2351 2.4 34.4 1.0
ND1 B:HIS70 2.5 32.2 1.0
CG B:ASP73 3.0 30.6 1.0
OD1 B:ASP73 3.3 33.8 1.0
CG B:HIS70 3.3 27.9 1.0
CB B:HIS70 3.3 27.7 1.0
N B:HIS70 3.6 27.3 1.0
CE1 B:HIS70 3.6 31.9 1.0
CA B:HIS70 4.1 27.0 1.0
CB B:ASP73 4.5 29.4 1.0
NH1 B:ARG153 4.5 47.2 1.0
CD2 B:HIS70 4.5 31.0 1.0
C B:VAL69 4.6 27.2 1.0
NE2 B:HIS70 4.7 30.8 1.0
O B:HOH2104 4.7 36.3 1.0
CA B:VAL69 4.8 26.9 1.0
CG2 B:VAL33 4.8 33.3 1.0
O B:HIS70 4.9 27.8 1.0
O B:HOH2043 4.9 38.5 1.0
C B:HIS70 5.0 26.5 1.0
NH2 B:ARG153 5.0 44.7 1.0

Zinc binding site 8 out of 11 in 2bp0

Go back to Zinc Binding Sites List in 2bp0
Zinc binding site 8 out of 11 in the M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1340

b:30.6
occ:1.00
O B:HOH2352 1.8 27.6 1.0
OD2 B:ASP167 2.1 28.3 1.0
NE2 B:HIS165 2.2 25.1 1.0
OE2 A:GLU195 2.3 31.5 1.0
OD1 B:ASP167 2.6 30.9 1.0
CG B:ASP167 2.7 27.9 1.0
CD A:GLU195 2.9 29.1 1.0
OE1 A:GLU195 3.0 28.0 1.0
CE1 B:HIS165 3.0 25.9 1.0
CD2 B:HIS165 3.3 24.2 1.0
O A:HOH2288 3.5 53.9 1.0
O B:HOH2276 3.6 46.6 1.0
OG1 B:THR234 4.0 27.5 1.0
ND1 B:HIS165 4.2 25.7 1.0
CG A:GLU195 4.2 25.5 1.0
CB B:ASP167 4.3 28.1 1.0
O A:HOH2281 4.3 27.0 1.0
CB B:THR234 4.3 28.2 1.0
CG B:HIS165 4.3 22.4 1.0
N B:THR234 4.4 28.2 1.0
O B:GLY232 4.6 32.5 1.0
CB A:ALA191 4.7 25.2 1.0
N B:ASP167 4.8 25.7 1.0
CA B:THR234 5.0 28.1 1.0

Zinc binding site 9 out of 11 in 2bp0

Go back to Zinc Binding Sites List in 2bp0
Zinc binding site 9 out of 11 in the M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1341

b:34.9
occ:0.75
O3 B:SO41344 1.5 53.8 0.8
O2 B:SO41345 1.9 38.5 0.8
NE2 B:HIS313 2.0 33.6 1.0
O B:HOH2353 2.3 28.9 1.0
CE1 B:HIS313 2.8 33.0 1.0
S B:SO41344 2.9 53.3 0.8
O B:HOH2360 3.0 64.6 1.0
S B:SO41345 3.1 33.6 0.8
CD2 B:HIS313 3.1 30.9 1.0
O3 B:SO41345 3.2 40.3 0.8
O2 B:SO41344 3.5 54.7 0.8
O1 B:SO41344 3.7 55.1 0.8
O4 B:SO41344 3.8 55.9 0.8
O4 B:SO41345 3.9 39.3 0.8
ND1 B:HIS313 4.0 32.5 1.0
O1 B:SO41345 4.1 38.9 0.8
CG B:HIS313 4.1 28.4 1.0
O B:HOH2358 4.3 57.9 1.0
CB B:ALA296 5.0 24.5 1.0

Zinc binding site 10 out of 11 in 2bp0

Go back to Zinc Binding Sites List in 2bp0
Zinc binding site 10 out of 11 in the M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of M144L Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1342

b:50.4
occ:0.25
O B:HOH2355 1.7 40.4 1.0
OE1 B:GLU34 2.1 43.7 1.0
O B:HOH2356 2.2 53.8 1.0
O B:HOH2354 2.4 65.5 1.0
O B:HOH2357 3.0 63.5 1.0
CD B:GLU34 3.0 39.8 1.0
OE2 B:GLU34 3.1 41.0 1.0
ND1 B:HIS8 3.3 46.4 1.0
CB B:HIS8 4.0 44.5 1.0
CG B:HIS8 4.0 45.0 1.0
CE1 B:HIS8 4.2 46.4 1.0
CG B:GLU34 4.4 35.0 1.0
CE B:LYS10 4.9 49.9 1.0
O B:HOH2117 5.0 39.4 1.0

Reference:

M.A.Hough, M.J.Ellis, S.Antonyuk, R.W.Strange, G.Sawers, R.R.Eady, S.S.Hasnain. High Resolution Structural Studies of Mutants Provide Insights Into Catalysis and Electron Transfer Processes in Copper Nitrite Reductase J.Mol.Biol. V. 350 300 2005.
ISSN: ISSN 0022-2836
PubMed: 15927201
DOI: 10.1016/J.JMB.2005.04.006
Page generated: Wed Dec 16 03:18:36 2020

Last articles

Ca in 6AM3
Ca in 6AMZ
Ca in 6AMF
Ca in 6AK9
Ca in 6AIJ
Ca in 6AJA
Ca in 6AK8
Ca in 6AJB
Ca in 6AHG
Ca in 6AI0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy