Atomistry » Zinc » PDB 2bn7-2c6n » 2bno
Atomistry »
  Zinc »
    PDB 2bn7-2c6n »
      2bno »

Zinc in PDB 2bno: The Structure of Hydroxypropylphosphonic Acid Epoxidase From S. Wedmorenis.

Protein crystallography data

The structure of The Structure of Hydroxypropylphosphonic Acid Epoxidase From S. Wedmorenis., PDB code: 2bno was solved by K.Mcluskey, S.Cameron, W.N.Hunter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.90
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 86.430, 86.430, 221.853, 90.00, 90.00, 120.00
R / Rfree (%) 18.1 / 24.2

Other elements in 2bno:

The structure of The Structure of Hydroxypropylphosphonic Acid Epoxidase From S. Wedmorenis. also contains other interesting chemical elements:

Mercury (Hg) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the The Structure of Hydroxypropylphosphonic Acid Epoxidase From S. Wedmorenis. (pdb code 2bno). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Structure of Hydroxypropylphosphonic Acid Epoxidase From S. Wedmorenis., PDB code: 2bno:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2bno

Go back to Zinc Binding Sites List in 2bno
Zinc binding site 1 out of 2 in the The Structure of Hydroxypropylphosphonic Acid Epoxidase From S. Wedmorenis.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of Hydroxypropylphosphonic Acid Epoxidase From S. Wedmorenis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1201

b:37.4
occ:1.00
O A:HOH2195 1.9 29.6 1.0
OE1 A:GLU142 2.0 35.5 1.0
NE2 A:HIS180 2.1 24.6 1.0
NE2 A:HIS138 2.1 28.9 1.0
O A:HOH2197 2.4 50.4 1.0
CD A:GLU142 2.8 24.3 1.0
CE1 A:HIS180 2.9 25.1 1.0
O A:HOH2192 3.0 47.2 1.0
OE2 A:GLU142 3.0 42.0 1.0
CD2 A:HIS138 3.0 30.7 1.0
CE1 A:HIS138 3.2 33.5 1.0
CD2 A:HIS180 3.2 22.4 1.0
O A:HOH2196 3.4 50.7 1.0
ND2 A:ASN135 4.1 40.4 1.0
ND1 A:HIS180 4.1 22.8 1.0
CG A:HIS138 4.2 33.4 1.0
ND1 A:HIS138 4.3 38.0 1.0
CG A:HIS180 4.3 23.3 1.0
CG A:GLU142 4.3 20.6 1.0
OD1 A:ASN197 4.5 23.6 0.7
ND2 A:ASN197 4.6 36.1 1.0
CB A:GLU142 4.7 19.9 1.0
O B:HOH2040 4.7 55.0 1.0
CE1 A:PHE182 4.8 25.0 0.5

Zinc binding site 2 out of 2 in 2bno

Go back to Zinc Binding Sites List in 2bno
Zinc binding site 2 out of 2 in the The Structure of Hydroxypropylphosphonic Acid Epoxidase From S. Wedmorenis.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structure of Hydroxypropylphosphonic Acid Epoxidase From S. Wedmorenis. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1201

b:35.2
occ:1.00
O B:HOH2248 2.0 25.3 1.0
OE1 B:GLU142 2.1 34.1 1.0
NE2 B:HIS138 2.1 24.9 1.0
NE2 B:HIS180 2.1 27.2 1.0
O B:HOH2250 2.2 36.3 1.0
O B:HOH2249 2.3 39.6 1.0
CE1 B:HIS180 3.0 23.2 1.0
CD B:GLU142 3.0 24.5 1.0
CE1 B:HIS138 3.0 22.1 1.0
CD2 B:HIS138 3.1 29.3 1.0
CD2 B:HIS180 3.2 27.5 1.0
OE2 B:GLU142 3.2 46.4 1.0
O B:HOH2242 4.0 48.2 1.0
ND2 B:ASN135 4.0 30.9 1.0
ND1 B:HIS180 4.1 24.8 1.0
ND1 B:HIS138 4.2 32.9 1.0
OD1 B:ASN197 4.2 25.2 0.5
O B:HOH2180 4.2 45.8 1.0
CG B:HIS138 4.2 29.8 1.0
CG B:HIS180 4.3 22.7 1.0
CG B:GLU142 4.4 26.8 1.0
ND2 B:ASN197 4.4 28.9 1.0
O A:HOH2035 4.6 45.0 1.0
CG B:ASN197 4.8 16.7 0.5
CB B:GLU142 4.8 21.4 1.0

Reference:

K.Mcluskey, S.Cameron, F.Hammerschmidt, W.N.Hunter. Structure and Reactivity of Hydroxypropylphosphonic Acid Epoxidase in Fosfomycin Biosynthesis By A Cation- and Flavin-Dependent Mechanism. Proc.Natl.Acad.Sci.Usa V. 102 14221 2005.
ISSN: ISSN 0027-8424
PubMed: 16186494
DOI: 10.1073/PNAS.0504314102
Page generated: Wed Dec 16 03:18:35 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy