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Zinc in PDB 2az4: Crystal Structure of A Protein of Unknown Function From Enterococcus Faecalis V583

Protein crystallography data

The structure of Crystal Structure of A Protein of Unknown Function From Enterococcus Faecalis V583, PDB code: 2az4 was solved by R.Zhang, N.Maltseva, S.Moy, F.Collart, M.Cymborowski, W.Minor, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.996, 74.182, 214.624, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 24.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Protein of Unknown Function From Enterococcus Faecalis V583 (pdb code 2az4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of A Protein of Unknown Function From Enterococcus Faecalis V583, PDB code: 2az4:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 2az4

Go back to Zinc Binding Sites List in 2az4
Zinc binding site 1 out of 4 in the Crystal Structure of A Protein of Unknown Function From Enterococcus Faecalis V583


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Protein of Unknown Function From Enterococcus Faecalis V583 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn601

b:23.7
occ:1.00
O A:HOH941 2.2 18.9 1.0
NE2 A:HIS167 2.2 13.4 1.0
NE2 A:HIS92 2.3 16.1 1.0
O A:HOH795 2.3 18.6 1.0
ND1 A:HIS94 2.3 13.8 1.0
OD2 A:ASP189 2.4 13.4 1.0
CE1 A:HIS167 3.2 10.4 1.0
CD2 A:HIS92 3.2 18.0 1.0
CD2 A:HIS167 3.2 13.2 1.0
CE1 A:HIS94 3.2 14.0 1.0
CE1 A:HIS92 3.3 15.3 1.0
CG A:HIS94 3.3 14.1 1.0
CG A:ASP189 3.4 16.3 1.0
ZN A:ZN602 3.5 27.7 1.0
CB A:HIS94 3.6 15.1 1.0
CB A:ASP189 3.7 16.5 1.0
O A:HOH820 4.0 34.0 1.0
O A:HOH652 4.0 22.7 1.0
NE2 A:HIS97 4.1 17.2 1.0
O A:HOH696 4.2 33.0 1.0
ND1 A:HIS167 4.3 12.2 1.0
CD2 A:HIS97 4.3 16.9 1.0
CG A:HIS92 4.3 15.3 1.0
CG A:HIS167 4.4 14.9 1.0
ND1 A:HIS92 4.4 16.0 1.0
NE2 A:HIS94 4.4 14.3 1.0
CE1 A:HIS382 4.4 21.3 1.0
CD2 A:HIS94 4.5 14.4 1.0
NE2 A:HIS382 4.5 20.5 1.0
OD1 A:ASP189 4.5 16.7 1.0
OD1 A:ASP96 4.7 19.2 1.0
OD1 A:ASP168 4.7 15.6 1.0

Zinc binding site 2 out of 4 in 2az4

Go back to Zinc Binding Sites List in 2az4
Zinc binding site 2 out of 4 in the Crystal Structure of A Protein of Unknown Function From Enterococcus Faecalis V583


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Protein of Unknown Function From Enterococcus Faecalis V583 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn602

b:27.7
occ:1.00
NE2 A:HIS97 2.2 17.2 1.0
OD2 A:ASP189 2.2 13.4 1.0
NE2 A:HIS404 2.3 21.9 1.0
OD2 A:ASP96 2.3 16.9 1.0
O A:HOH795 2.3 18.6 1.0
O A:HOH652 2.3 22.7 1.0
CG A:ASP189 3.1 16.3 1.0
CD2 A:HIS97 3.1 16.9 1.0
CE1 A:HIS404 3.2 23.6 1.0
OD1 A:ASP189 3.2 16.7 1.0
CE1 A:HIS97 3.2 16.3 1.0
CG A:ASP96 3.3 18.6 1.0
CD2 A:HIS404 3.3 22.4 1.0
ZN A:ZN601 3.5 23.7 1.0
OD1 A:ASP96 3.6 19.2 1.0
O A:HOH941 3.6 18.9 1.0
O A:HOH820 3.9 34.0 1.0
CE1 A:HIS382 4.2 21.3 1.0
CG A:HIS97 4.3 16.2 1.0
ND1 A:HIS97 4.3 14.4 1.0
ND1 A:HIS404 4.3 22.9 1.0
NE2 A:HIS92 4.3 16.1 1.0
CG A:HIS404 4.4 23.0 1.0
CE1 A:HIS92 4.4 15.3 1.0
CB A:ASP189 4.5 16.5 1.0
NE2 A:HIS382 4.5 20.5 1.0
CB A:ASP96 4.6 16.8 1.0
O A:HOH630 4.9 19.9 1.0
CG2 A:ILE18 5.0 23.3 1.0

Zinc binding site 3 out of 4 in 2az4

Go back to Zinc Binding Sites List in 2az4
Zinc binding site 3 out of 4 in the Crystal Structure of A Protein of Unknown Function From Enterococcus Faecalis V583


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of A Protein of Unknown Function From Enterococcus Faecalis V583 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn603

b:30.8
occ:1.00
NE2 B:HIS92 2.2 21.8 1.0
ND1 B:HIS94 2.3 23.2 1.0
NE2 B:HIS167 2.3 24.0 1.0
O B:HOH616 2.3 25.1 1.0
OD2 B:ASP189 2.4 21.7 1.0
CD2 B:HIS92 3.1 23.5 1.0
CE1 B:HIS92 3.2 23.9 1.0
CD2 B:HIS167 3.2 24.5 1.0
CE1 B:HIS94 3.2 23.8 1.0
CG B:HIS94 3.3 23.4 1.0
CE1 B:HIS167 3.3 24.6 1.0
CG B:ASP189 3.4 24.2 1.0
ZN B:ZN604 3.5 36.0 1.0
CB B:HIS94 3.6 21.5 1.0
CB B:ASP189 3.7 24.2 1.0
O B:HOH744 4.0 41.5 1.0
O B:HOH781 4.2 34.5 1.0
O B:HOH637 4.2 28.4 1.0
NE2 B:HIS97 4.2 22.0 1.0
CD2 B:HIS97 4.2 21.6 1.0
ND1 B:HIS92 4.3 25.4 1.0
CG B:HIS92 4.3 23.6 1.0
CE1 B:HIS382 4.3 26.3 1.0
NE2 B:HIS94 4.4 26.1 1.0
CG B:HIS167 4.4 26.2 1.0
ND1 B:HIS167 4.4 24.7 1.0
CD2 B:HIS94 4.4 25.2 1.0
OD1 B:ASP189 4.5 23.3 1.0
OD1 B:ASP168 4.6 22.7 1.0
NE2 B:HIS382 4.6 24.8 1.0
OD1 B:ASP96 4.6 23.0 1.0

Zinc binding site 4 out of 4 in 2az4

Go back to Zinc Binding Sites List in 2az4
Zinc binding site 4 out of 4 in the Crystal Structure of A Protein of Unknown Function From Enterococcus Faecalis V583


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of A Protein of Unknown Function From Enterococcus Faecalis V583 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn604

b:36.0
occ:1.00
OD2 B:ASP189 2.2 21.7 1.0
NE2 B:HIS97 2.2 22.0 1.0
OD2 B:ASP96 2.3 24.7 1.0
NE2 B:HIS404 2.4 29.6 1.0
O B:HOH781 2.6 34.5 1.0
CE1 B:HIS404 2.9 32.3 1.0
CD2 B:HIS97 3.0 21.6 1.0
CG B:ASP189 3.0 24.2 1.0
OD1 B:ASP189 3.2 23.3 1.0
CG B:ASP96 3.2 22.9 1.0
CE1 B:HIS97 3.3 20.9 1.0
OD1 B:ASP96 3.5 23.0 1.0
ZN B:ZN603 3.5 30.8 1.0
CD2 B:HIS404 3.6 31.5 1.0
O B:HOH744 3.9 41.5 1.0
O B:HOH616 3.9 25.1 1.0
ND1 B:HIS404 4.1 32.2 1.0
CE1 B:HIS382 4.2 26.3 1.0
CG B:HIS97 4.2 22.0 1.0
NE2 B:HIS92 4.3 21.8 1.0
CE1 B:HIS92 4.3 23.9 1.0
ND1 B:HIS97 4.4 23.0 1.0
CB B:ASP189 4.5 24.2 1.0
CG B:HIS404 4.5 31.1 1.0
NE2 B:HIS382 4.6 24.8 1.0
O B:HOH643 4.6 35.8 1.0
CB B:ASP96 4.6 21.3 1.0

Reference:

R.Zhang, N.Maltseva, S.Moy, F.Collart, M.Cymborowski, W.Minor, A.Joachimiak. The 2.0 A Crystal Structure of A Hypothetical Protein From Enterococcus Faecalis V583 To Be Published.
Page generated: Wed Dec 16 03:17:58 2020

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