Zinc in PDB 2adr: ADR1 Dna-Binding Domain From Saccharomyces Cerevisiae, uc(Nmr), 25 Structures
Zinc Binding Sites:
The binding sites of Zinc atom in the ADR1 Dna-Binding Domain From Saccharomyces Cerevisiae, uc(Nmr), 25 Structures
(pdb code 2adr). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
ADR1 Dna-Binding Domain From Saccharomyces Cerevisiae, uc(Nmr), 25 Structures, PDB code: 2adr:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 2adr
Go back to
Zinc Binding Sites List in 2adr
Zinc binding site 1 out
of 2 in the ADR1 Dna-Binding Domain From Saccharomyces Cerevisiae, uc(Nmr), 25 Structures
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of ADR1 Dna-Binding Domain From Saccharomyces Cerevisiae, uc(Nmr), 25 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn162
b:0.0
occ:1.00
|
NE2
|
A:HIS155
|
2.0
|
0.0
|
1.0
|
NE2
|
A:HIS150
|
2.1
|
0.0
|
1.0
|
SG
|
A:CYS137
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS134
|
2.3
|
0.0
|
1.0
|
HB2
|
A:LEU136
|
2.7
|
0.0
|
1.0
|
CD2
|
A:HIS150
|
2.8
|
0.0
|
1.0
|
H
|
A:CYS137
|
2.8
|
0.0
|
1.0
|
CD2
|
A:HIS155
|
2.8
|
0.0
|
1.0
|
HD2
|
A:HIS150
|
2.8
|
0.0
|
1.0
|
HD2
|
A:HIS155
|
2.9
|
0.0
|
1.0
|
HB3
|
A:CYS137
|
3.0
|
0.0
|
1.0
|
CE1
|
A:HIS155
|
3.2
|
0.0
|
1.0
|
CB
|
A:CYS137
|
3.2
|
0.0
|
1.0
|
CE1
|
A:HIS150
|
3.2
|
0.0
|
1.0
|
N
|
A:CYS137
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS134
|
3.5
|
0.0
|
1.0
|
HB3
|
A:CYS134
|
3.5
|
0.0
|
1.0
|
HE1
|
A:HIS155
|
3.6
|
0.0
|
1.0
|
HE1
|
A:HIS150
|
3.6
|
0.0
|
1.0
|
HB2
|
A:CYS134
|
3.8
|
0.0
|
1.0
|
CB
|
A:LEU136
|
3.8
|
0.0
|
1.0
|
HD13
|
A:LEU136
|
3.8
|
0.0
|
1.0
|
CA
|
A:CYS137
|
3.9
|
0.0
|
1.0
|
H
|
A:LEU136
|
3.9
|
0.0
|
1.0
|
CG
|
A:HIS150
|
4.0
|
0.0
|
1.0
|
CG
|
A:HIS155
|
4.0
|
0.0
|
1.0
|
HB2
|
A:CYS137
|
4.1
|
0.0
|
1.0
|
HB2
|
A:ARG139
|
4.1
|
0.0
|
1.0
|
ND1
|
A:HIS150
|
4.2
|
0.0
|
1.0
|
ND1
|
A:HIS155
|
4.2
|
0.0
|
1.0
|
C
|
A:LEU136
|
4.2
|
0.0
|
1.0
|
HB3
|
A:LEU136
|
4.4
|
0.0
|
1.0
|
HH11
|
A:ARG139
|
4.4
|
0.0
|
1.0
|
HG
|
A:LEU136
|
4.4
|
0.0
|
1.0
|
CA
|
A:LEU136
|
4.4
|
0.0
|
1.0
|
H
|
A:ASN138
|
4.5
|
0.0
|
1.0
|
N
|
A:LEU136
|
4.5
|
0.0
|
1.0
|
CG
|
A:LEU136
|
4.5
|
0.0
|
1.0
|
HE2
|
A:PHE141
|
4.6
|
0.0
|
1.0
|
CD1
|
A:LEU136
|
4.6
|
0.0
|
1.0
|
HA
|
A:CYS137
|
4.7
|
0.0
|
1.0
|
C
|
A:CYS137
|
4.8
|
0.0
|
1.0
|
CA
|
A:CYS134
|
4.8
|
0.0
|
1.0
|
H
|
A:ARG139
|
4.8
|
0.0
|
1.0
|
HG3
|
A:ARG139
|
4.9
|
0.0
|
1.0
|
HA
|
A:ALA151
|
4.9
|
0.0
|
1.0
|
N
|
A:ASN138
|
5.0
|
0.0
|
1.0
|
HD11
|
A:LEU136
|
5.0
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 2 in 2adr
Go back to
Zinc Binding Sites List in 2adr
Zinc binding site 2 out
of 2 in the ADR1 Dna-Binding Domain From Saccharomyces Cerevisiae, uc(Nmr), 25 Structures
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of ADR1 Dna-Binding Domain From Saccharomyces Cerevisiae, uc(Nmr), 25 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn163
b:0.0
occ:1.00
|
NE2
|
A:HIS122
|
2.0
|
0.0
|
1.0
|
NE2
|
A:HIS126
|
2.1
|
0.0
|
1.0
|
SG
|
A:CYS109
|
2.4
|
0.0
|
1.0
|
SG
|
A:CYS106
|
2.4
|
0.0
|
1.0
|
HD3
|
A:ARG111
|
2.7
|
0.0
|
1.0
|
CD2
|
A:HIS126
|
2.7
|
0.0
|
1.0
|
HD2
|
A:HIS126
|
2.8
|
0.0
|
1.0
|
CD2
|
A:HIS122
|
2.9
|
0.0
|
1.0
|
HD2
|
A:ARG111
|
2.9
|
0.0
|
1.0
|
HD2
|
A:HIS122
|
2.9
|
0.0
|
1.0
|
HB3
|
A:CYS106
|
3.0
|
0.0
|
1.0
|
CB
|
A:CYS106
|
3.0
|
0.0
|
1.0
|
HB2
|
A:CYS106
|
3.0
|
0.0
|
1.0
|
HG2
|
A:ARG111
|
3.1
|
0.0
|
1.0
|
CE1
|
A:HIS126
|
3.2
|
0.0
|
1.0
|
CD
|
A:ARG111
|
3.2
|
0.0
|
1.0
|
CE1
|
A:HIS122
|
3.2
|
0.0
|
1.0
|
H
|
A:CYS109
|
3.3
|
0.0
|
1.0
|
HB
|
A:VAL108
|
3.4
|
0.0
|
1.0
|
HE1
|
A:HIS122
|
3.6
|
0.0
|
1.0
|
CG
|
A:ARG111
|
3.6
|
0.0
|
1.0
|
HE1
|
A:HIS126
|
3.6
|
0.0
|
1.0
|
HG3
|
A:ARG111
|
3.9
|
0.0
|
1.0
|
CG
|
A:HIS126
|
4.0
|
0.0
|
1.0
|
CB
|
A:CYS109
|
4.1
|
0.0
|
1.0
|
N
|
A:CYS109
|
4.1
|
0.0
|
1.0
|
CG
|
A:HIS122
|
4.1
|
0.0
|
1.0
|
ND1
|
A:HIS126
|
4.1
|
0.0
|
1.0
|
H
|
A:VAL108
|
4.2
|
0.0
|
1.0
|
ND1
|
A:HIS122
|
4.2
|
0.0
|
1.0
|
HB3
|
A:CYS109
|
4.4
|
0.0
|
1.0
|
CB
|
A:VAL108
|
4.4
|
0.0
|
1.0
|
CA
|
A:CYS106
|
4.5
|
0.0
|
1.0
|
HG22
|
A:VAL108
|
4.5
|
0.0
|
1.0
|
H
|
A:ARG111
|
4.6
|
0.0
|
1.0
|
NE
|
A:ARG111
|
4.6
|
0.0
|
1.0
|
CA
|
A:CYS109
|
4.6
|
0.0
|
1.0
|
HH11
|
A:ARG111
|
4.7
|
0.0
|
1.0
|
HE1
|
A:PHE113
|
4.7
|
0.0
|
1.0
|
HB2
|
A:CYS109
|
4.7
|
0.0
|
1.0
|
HD23
|
A:LEU119
|
4.8
|
0.0
|
1.0
|
HA
|
A:CYS106
|
4.9
|
0.0
|
1.0
|
O
|
A:HIS122
|
4.9
|
0.0
|
1.0
|
N
|
A:VAL108
|
4.9
|
0.0
|
1.0
|
C
|
A:VAL108
|
5.0
|
0.0
|
1.0
|
|
Reference:
P.M.Bowers,
L.E.Schaufler,
R.E.Klevit.
A Folding Transition and Novel Zinc Finger Accessory Domain in the Transcription Factor ADR1. Nat.Struct.Biol. V. 6 478 1999.
ISSN: ISSN 1072-8368
PubMed: 10331877
DOI: 10.1038/8283
Page generated: Wed Oct 16 21:36:32 2024
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