Zinc in PDB 2a20: Solution Structure of RIM2 Zinc Finger Domain

The binding sites of Zinc atom in the Solution Structure of RIM2 Zinc Finger Domain (pdb code 2a20). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of RIM2 Zinc Finger Domain, PDB code: 2a20:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of RIM2 Zinc Finger Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of RIM2 Zinc Finger Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn292 b:0.0 occ:1.00 SG A:CYS92 1.6 0.0 1.0 SG A:CYS119 2.5 0.0 1.0 HB A:ILE94 2.6 0.0 1.0 SG A:CYS116 2.6 0.0 1.0 SG A:CYS95 2.7 0.0 1.0 H A:CYS95 2.7 0.0 1.0 H A:CYS116 2.8 0.0 1.0 HB2 A:CYS119 3.0 0.0 1.0 CB A:CYS92 3.0 0.0 1.0 HB2 A:CYS92 3.2 0.0 1.0 HB3 A:CYS92 3.3 0.0 1.0 HD13 A:ILE94 3.3 0.0 1.0 CB A:CYS119 3.4 0.0 1.0 HB3 A:CYS116 3.5 0.0 1.0 N A:CYS95 3.6 0.0 1.0 H A:ILE94 3.6 0.0 1.0 CB A:CYS116 3.7 0.0 1.0 CB A:ILE94 3.7 0.0 1.0 N A:CYS116 3.7 0.0 1.0 HB3 A:CYS119 3.9 0.0 1.0 HB A:THR98 4.0 0.0 1.0 CB A:CYS95 4.0 0.0 1.0 HB2 A:PHE115 4.1 0.0 1.0 CD1 A:ILE94 4.1 0.0 1.0 HA A:PHE115 4.1 0.0 1.0 H A:HIS96 4.2 0.0 1.0 H A:CYS119 4.3 0.0 1.0 HB3 A:CYS95 4.3 0.0 1.0 HG21 A:ILE94 4.3 0.0 1.0 HD11 A:ILE94 4.3 0.0 1.0 CA A:CYS92 4.3 0.0 1.0 CA A:CYS116 4.3 0.0 1.0 N A:ILE94 4.3 0.0 1.0 CA A:ILE94 4.4 0.0 1.0 CA A:CYS95 4.4 0.0 1.0 CG1 A:ILE94 4.4 0.0 1.0 CG2 A:ILE94 4.4 0.0 1.0 HG22 A:ILE94 4.5 0.0 1.0 C A:ILE94 4.5 0.0 1.0 HA A:CYS92 4.5 0.0 1.0 N A:CYS119 4.6 0.0 1.0 CA A:CYS119 4.6 0.0 1.0 HB2 A:CYS116 4.6 0.0 1.0 HB2 A:ARG118 4.6 0.0 1.0 HG12 A:ILE94 4.7 0.0 1.0 C A:CYS92 4.7 0.0 1.0 C A:PHE115 4.8 0.0 1.0 H A:THR98 4.8 0.0 1.0 CA A:PHE115 4.8 0.0 1.0 H A:LYS97 4.9 0.0 1.0 H A:GLY93 4.9 0.0 1.0 N A:HIS96 4.9 0.0 1.0 HB2 A:CYS95 4.9 0.0 1.0 CB A:PHE115 4.9 0.0 1.0 CB A:THR98 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of RIM2 Zinc Finger Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of RIM2 Zinc Finger Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn308 b:0.0 occ:1.00 SG A:CYS108 1.6 0.0 1.0 H A:CYS111 2.6 0.0 1.0 SG A:CYS137 2.6 0.0 1.0 SG A:CYS134 2.6 0.0 1.0 SG A:CYS111 2.6 0.0 1.0 HB2 A:TYR110 3.0 0.0 1.0 CB A:CYS108 3.0 0.0 1.0 HB2 A:CYS137 3.1 0.0 1.0 HB2 A:CYS111 3.2 0.0 1.0 H A:CYS134 3.2 0.0 1.0 HB2 A:CYS108 3.2 0.0 1.0 HB3 A:CYS108 3.3 0.0 1.0 CB A:CYS111 3.4 0.0 1.0 CB A:CYS137 3.5 0.0 1.0 N A:CYS111 3.5 0.0 1.0 HB3 A:CYS134 3.6 0.0 1.0 CB A:CYS134 3.7 0.0 1.0 H A:TYR110 3.8 0.0 1.0 HD2 A:TYR110 3.9 0.0 1.0 HG13 A:VAL133 4.0 0.0 1.0 N A:CYS134 4.0 0.0 1.0 CB A:TYR110 4.0 0.0 1.0 CA A:CYS111 4.1 0.0 1.0 HB3 A:CYS137 4.1 0.0 1.0 H A:CYS137 4.2 0.0 1.0 HE2 A:PHE115 4.2 0.0 1.0 CA A:CYS108 4.3 0.0 1.0 H A:GLN112 4.4 0.0 1.0 HB3 A:CYS111 4.4 0.0 1.0 HA A:CYS108 4.4 0.0 1.0 CA A:CYS134 4.4 0.0 1.0 HA A:VAL133 4.4 0.0 1.0 HB3 A:TYR110 4.5 0.0 1.0 C A:TYR110 4.5 0.0 1.0 N A:TYR110 4.5 0.0 1.0 HB2 A:LEU136 4.5 0.0 1.0 HB2 A:CYS134 4.6 0.0 1.0 N A:CYS137 4.6 0.0 1.0 CA A:TYR110 4.6 0.0 1.0 CA A:CYS137 4.6 0.0 1.0 HG11 A:VAL133 4.6 0.0 1.0 CD2 A:TYR110 4.7 0.0 1.0 C A:CYS108 4.8 0.0 1.0 CG1 A:VAL133 4.8 0.0 1.0 HA A:CYS111 4.8 0.0 1.0 CG A:TYR110 4.9 0.0 1.0 H A:THR113 4.9 0.0 1.0 O A:CYS134 5.0 0.0 1.0

I.Dulubova, X.Lou, J.Lu, I.Huryeva, A.Alam, R.Schneggenburger, T.C.Sudhof, J.Rizo. A MUNC13/Rim/RAB3 Tripartite Complex: From Priming to Plasticity? Embo J. V. 24 2839 2005.
ISSN: ISSN 0261-4189
PubMed: 16052212
DOI: 10.1038/SJ.EMBOJ.7600753