Zinc in PDB 2a20: Solution Structure of RIM2 Zinc Finger Domain
Zinc Binding Sites:
The binding sites of Zinc atom in the Solution Structure of RIM2 Zinc Finger Domain
(pdb code 2a20). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
Solution Structure of RIM2 Zinc Finger Domain, PDB code: 2a20:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 2a20
Go back to
Zinc Binding Sites List in 2a20
Zinc binding site 1 out
of 2 in the Solution Structure of RIM2 Zinc Finger Domain
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Solution Structure of RIM2 Zinc Finger Domain within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn292
b:0.0
occ:1.00
|
SG
|
A:CYS92
|
1.6
|
0.0
|
1.0
|
SG
|
A:CYS119
|
2.5
|
0.0
|
1.0
|
HB
|
A:ILE94
|
2.6
|
0.0
|
1.0
|
SG
|
A:CYS116
|
2.6
|
0.0
|
1.0
|
SG
|
A:CYS95
|
2.7
|
0.0
|
1.0
|
H
|
A:CYS95
|
2.7
|
0.0
|
1.0
|
H
|
A:CYS116
|
2.8
|
0.0
|
1.0
|
HB2
|
A:CYS119
|
3.0
|
0.0
|
1.0
|
CB
|
A:CYS92
|
3.0
|
0.0
|
1.0
|
HB2
|
A:CYS92
|
3.2
|
0.0
|
1.0
|
HB3
|
A:CYS92
|
3.3
|
0.0
|
1.0
|
HD13
|
A:ILE94
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS119
|
3.4
|
0.0
|
1.0
|
HB3
|
A:CYS116
|
3.5
|
0.0
|
1.0
|
N
|
A:CYS95
|
3.6
|
0.0
|
1.0
|
H
|
A:ILE94
|
3.6
|
0.0
|
1.0
|
CB
|
A:CYS116
|
3.7
|
0.0
|
1.0
|
CB
|
A:ILE94
|
3.7
|
0.0
|
1.0
|
N
|
A:CYS116
|
3.7
|
0.0
|
1.0
|
HB3
|
A:CYS119
|
3.9
|
0.0
|
1.0
|
HB
|
A:THR98
|
4.0
|
0.0
|
1.0
|
CB
|
A:CYS95
|
4.0
|
0.0
|
1.0
|
HB2
|
A:PHE115
|
4.1
|
0.0
|
1.0
|
CD1
|
A:ILE94
|
4.1
|
0.0
|
1.0
|
HA
|
A:PHE115
|
4.1
|
0.0
|
1.0
|
H
|
A:HIS96
|
4.2
|
0.0
|
1.0
|
H
|
A:CYS119
|
4.3
|
0.0
|
1.0
|
HB3
|
A:CYS95
|
4.3
|
0.0
|
1.0
|
HG21
|
A:ILE94
|
4.3
|
0.0
|
1.0
|
HD11
|
A:ILE94
|
4.3
|
0.0
|
1.0
|
CA
|
A:CYS92
|
4.3
|
0.0
|
1.0
|
CA
|
A:CYS116
|
4.3
|
0.0
|
1.0
|
N
|
A:ILE94
|
4.3
|
0.0
|
1.0
|
CA
|
A:ILE94
|
4.4
|
0.0
|
1.0
|
CA
|
A:CYS95
|
4.4
|
0.0
|
1.0
|
CG1
|
A:ILE94
|
4.4
|
0.0
|
1.0
|
CG2
|
A:ILE94
|
4.4
|
0.0
|
1.0
|
HG22
|
A:ILE94
|
4.5
|
0.0
|
1.0
|
C
|
A:ILE94
|
4.5
|
0.0
|
1.0
|
HA
|
A:CYS92
|
4.5
|
0.0
|
1.0
|
N
|
A:CYS119
|
4.6
|
0.0
|
1.0
|
CA
|
A:CYS119
|
4.6
|
0.0
|
1.0
|
HB2
|
A:CYS116
|
4.6
|
0.0
|
1.0
|
HB2
|
A:ARG118
|
4.6
|
0.0
|
1.0
|
HG12
|
A:ILE94
|
4.7
|
0.0
|
1.0
|
C
|
A:CYS92
|
4.7
|
0.0
|
1.0
|
C
|
A:PHE115
|
4.8
|
0.0
|
1.0
|
H
|
A:THR98
|
4.8
|
0.0
|
1.0
|
CA
|
A:PHE115
|
4.8
|
0.0
|
1.0
|
H
|
A:LYS97
|
4.9
|
0.0
|
1.0
|
H
|
A:GLY93
|
4.9
|
0.0
|
1.0
|
N
|
A:HIS96
|
4.9
|
0.0
|
1.0
|
HB2
|
A:CYS95
|
4.9
|
0.0
|
1.0
|
CB
|
A:PHE115
|
4.9
|
0.0
|
1.0
|
CB
|
A:THR98
|
5.0
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 2 in 2a20
Go back to
Zinc Binding Sites List in 2a20
Zinc binding site 2 out
of 2 in the Solution Structure of RIM2 Zinc Finger Domain
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Solution Structure of RIM2 Zinc Finger Domain within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn308
b:0.0
occ:1.00
|
SG
|
A:CYS108
|
1.6
|
0.0
|
1.0
|
H
|
A:CYS111
|
2.6
|
0.0
|
1.0
|
SG
|
A:CYS137
|
2.6
|
0.0
|
1.0
|
SG
|
A:CYS134
|
2.6
|
0.0
|
1.0
|
SG
|
A:CYS111
|
2.6
|
0.0
|
1.0
|
HB2
|
A:TYR110
|
3.0
|
0.0
|
1.0
|
CB
|
A:CYS108
|
3.0
|
0.0
|
1.0
|
HB2
|
A:CYS137
|
3.1
|
0.0
|
1.0
|
HB2
|
A:CYS111
|
3.2
|
0.0
|
1.0
|
H
|
A:CYS134
|
3.2
|
0.0
|
1.0
|
HB2
|
A:CYS108
|
3.2
|
0.0
|
1.0
|
HB3
|
A:CYS108
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS111
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS137
|
3.5
|
0.0
|
1.0
|
N
|
A:CYS111
|
3.5
|
0.0
|
1.0
|
HB3
|
A:CYS134
|
3.6
|
0.0
|
1.0
|
CB
|
A:CYS134
|
3.7
|
0.0
|
1.0
|
H
|
A:TYR110
|
3.8
|
0.0
|
1.0
|
HD2
|
A:TYR110
|
3.9
|
0.0
|
1.0
|
HG13
|
A:VAL133
|
4.0
|
0.0
|
1.0
|
N
|
A:CYS134
|
4.0
|
0.0
|
1.0
|
CB
|
A:TYR110
|
4.0
|
0.0
|
1.0
|
CA
|
A:CYS111
|
4.1
|
0.0
|
1.0
|
HB3
|
A:CYS137
|
4.1
|
0.0
|
1.0
|
H
|
A:CYS137
|
4.2
|
0.0
|
1.0
|
HE2
|
A:PHE115
|
4.2
|
0.0
|
1.0
|
CA
|
A:CYS108
|
4.3
|
0.0
|
1.0
|
H
|
A:GLN112
|
4.4
|
0.0
|
1.0
|
HB3
|
A:CYS111
|
4.4
|
0.0
|
1.0
|
HA
|
A:CYS108
|
4.4
|
0.0
|
1.0
|
CA
|
A:CYS134
|
4.4
|
0.0
|
1.0
|
HA
|
A:VAL133
|
4.4
|
0.0
|
1.0
|
HB3
|
A:TYR110
|
4.5
|
0.0
|
1.0
|
C
|
A:TYR110
|
4.5
|
0.0
|
1.0
|
N
|
A:TYR110
|
4.5
|
0.0
|
1.0
|
HB2
|
A:LEU136
|
4.5
|
0.0
|
1.0
|
HB2
|
A:CYS134
|
4.6
|
0.0
|
1.0
|
N
|
A:CYS137
|
4.6
|
0.0
|
1.0
|
CA
|
A:TYR110
|
4.6
|
0.0
|
1.0
|
CA
|
A:CYS137
|
4.6
|
0.0
|
1.0
|
HG11
|
A:VAL133
|
4.6
|
0.0
|
1.0
|
CD2
|
A:TYR110
|
4.7
|
0.0
|
1.0
|
C
|
A:CYS108
|
4.8
|
0.0
|
1.0
|
CG1
|
A:VAL133
|
4.8
|
0.0
|
1.0
|
HA
|
A:CYS111
|
4.8
|
0.0
|
1.0
|
CG
|
A:TYR110
|
4.9
|
0.0
|
1.0
|
H
|
A:THR113
|
4.9
|
0.0
|
1.0
|
O
|
A:CYS134
|
5.0
|
0.0
|
1.0
|
|
Reference:
I.Dulubova,
X.Lou,
J.Lu,
I.Huryeva,
A.Alam,
R.Schneggenburger,
T.C.Sudhof,
J.Rizo.
A MUNC13/Rim/RAB3 Tripartite Complex: From Priming to Plasticity? Embo J. V. 24 2839 2005.
ISSN: ISSN 0261-4189
PubMed: 16052212
DOI: 10.1038/SJ.EMBOJ.7600753
Page generated: Wed Oct 16 21:28:56 2024
|