Zinc in PDB 1zwj: X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200

The structure of X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200, PDB code: 1zwj was solved by G.E.Wesenberg, D.W.Smith, G.N.Phillips Jr., J.G.Mccoy, K.A.Johnson, E.Bitto, C.A.Bingman, S.T.M.Allard, Center For Eukaryotic Structuralgenomics (Cesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.59 / 2.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	59.984, 95.535, 110.522, 90.00, 90.00, 90.00
R / Rfree (%)	21.5 / 26.9

The binding sites of Zinc atom in the X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200 (pdb code 1zwj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200, PDB code: 1zwj:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn400 b:57.1 occ:1.00 ND1 A:HIS133 2.3 54.7 1.0 ND1 A:HIS184 2.4 60.3 1.0 CB A:CYS63 2.6 79.8 1.0 SG A:CYS63 2.6 74.9 1.0 SG A:CYS66 2.7 75.8 1.0 CG A:HIS184 3.1 58.9 1.0 CE1 A:HIS184 3.2 60.5 1.0 CG A:HIS133 3.3 56.4 1.0 CE1 A:HIS133 3.3 55.4 1.0 CB A:HIS184 3.4 56.0 1.0 N A:CYS66 3.5 79.9 1.0 CA A:CYS63 3.5 80.8 1.0 CB A:HIS133 3.5 59.0 1.0 O A:CYS63 3.7 80.6 1.0 C A:CYS63 3.7 80.7 1.0 N A:CYS63 3.8 82.2 1.0 CB A:CYS66 3.9 77.8 1.0 CA A:CYS66 4.0 78.5 1.0 CD2 A:HIS184 4.0 59.5 1.0 N A:PHE65 4.1 81.7 1.0 CB A:PHE65 4.1 83.0 1.0 C A:PHE65 4.1 80.9 1.0 NE2 A:HIS184 4.1 61.2 1.0 CA A:HIS133 4.1 61.6 1.0 CA A:PHE65 4.3 81.6 1.0 NE2 A:HIS133 4.3 55.5 1.0 CA A:HIS184 4.3 54.8 1.0 CD2 A:HIS133 4.4 55.7 1.0 C A:SER62 4.5 84.0 1.0 N A:PRO64 4.7 80.4 1.0 N A:HIS184 4.8 57.2 1.0 N A:HIS133 4.9 60.4 1.0 O A:SER62 4.9 84.1 1.0 O A:PHE65 4.9 81.1 1.0

Zinc binding site 2 out of 4 in the X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:45.3 occ:1.00 ND1 A:HIS255 2.2 50.6 1.0 ND1 A:HIS310 2.3 32.4 1.0 SG A:CYS216 2.3 42.4 1.0 SG A:CYS219 2.5 49.4 1.0 CE1 A:HIS255 3.0 49.1 1.0 CB A:CYS216 3.1 44.9 1.0 CG A:HIS255 3.1 50.5 1.0 CG A:HIS310 3.2 33.3 1.0 CE1 A:HIS310 3.3 32.5 1.0 CB A:CYS219 3.3 48.1 1.0 CB A:HIS310 3.5 33.3 1.0 CB A:HIS255 3.5 48.5 1.0 N A:CYS219 3.5 46.1 1.0 CA A:CYS219 3.8 48.5 1.0 CA A:HIS255 4.0 47.9 1.0 NE2 A:HIS255 4.1 49.9 1.0 CD2 A:HIS255 4.1 50.6 1.0 C A:LEU218 4.3 44.7 1.0 NE2 A:HIS310 4.4 33.5 1.0 CD2 A:HIS310 4.4 33.4 1.0 O A:CYS216 4.4 50.0 1.0 CA A:CYS216 4.5 46.4 1.0 CB A:LEU218 4.6 43.9 1.0 C A:CYS216 4.7 47.6 1.0 CA A:HIS310 4.8 32.9 1.0 CA A:LEU218 4.8 44.4 1.0 O A:PRO307 4.8 42.9 1.0 N A:LEU218 4.9 42.7 1.0 O A:HOH411 5.0 55.3 1.0

Zinc binding site 3 out of 4 in the X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn402 b:63.9 occ:1.00 ND1 B:HIS184 2.3 60.7 1.0 ND1 B:HIS133 2.4 70.6 1.0 SG B:CYS66 2.7 83.2 1.0 SG B:CYS63 2.7 79.5 1.0 CB B:CYS63 2.8 83.5 1.0 CE1 B:HIS184 2.9 59.8 1.0 CG B:HIS184 3.2 59.2 1.0 CG B:HIS133 3.3 70.0 1.0 O B:CYS63 3.4 83.4 1.0 CE1 B:HIS133 3.4 72.0 1.0 CA B:CYS63 3.5 83.3 1.0 N B:CYS66 3.5 86.2 1.0 CB B:HIS133 3.5 66.4 1.0 C B:CYS63 3.6 83.5 1.0 N B:CYS63 3.7 84.2 1.0 CB B:HIS184 3.8 57.3 1.0 CB B:CYS66 3.8 86.3 1.0 NE2 B:HIS184 3.9 59.7 1.0 C B:PHE65 3.9 85.2 1.0 N B:PHE65 4.0 83.8 1.0 CB B:PHE65 4.0 86.3 1.0 CA B:CYS66 4.0 86.8 1.0 CD2 B:HIS184 4.1 60.2 1.0 CA B:HIS133 4.1 64.1 1.0 CA B:PHE65 4.2 84.6 1.0 C B:SER62 4.4 85.5 1.0 CD2 B:HIS133 4.5 71.9 1.0 NE2 B:HIS133 4.5 72.2 1.0 N B:PRO64 4.6 83.2 1.0 O B:PHE65 4.7 85.3 1.0 CA B:HIS184 4.7 56.1 1.0 N B:HIS133 4.8 62.2 1.0 CB B:SER62 4.8 86.8 1.0 O B:SER62 5.0 85.5 1.0

Zinc binding site 4 out of 4 in the X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn403 b:45.4 occ:1.00 ND1 B:HIS255 2.3 46.6 1.0 SG B:CYS216 2.3 45.3 1.0 ND1 B:HIS310 2.4 36.5 1.0 SG B:CYS219 2.5 48.1 1.0 CG B:HIS255 3.2 46.4 1.0 CB B:CYS216 3.2 45.9 1.0 CG B:HIS310 3.2 36.6 1.0 CE1 B:HIS255 3.3 47.9 1.0 CE1 B:HIS310 3.4 38.4 1.0 CB B:CYS219 3.4 48.5 1.0 CB B:HIS255 3.4 46.3 1.0 CB B:HIS310 3.4 34.9 1.0 N B:CYS219 3.6 46.8 1.0 CA B:CYS219 3.8 48.2 1.0 CA B:HIS255 3.9 46.9 1.0 CD2 B:HIS255 4.4 45.8 1.0 C B:LEU218 4.4 44.7 1.0 NE2 B:HIS255 4.4 47.8 1.0 CD2 B:HIS310 4.4 36.8 1.0 NE2 B:HIS310 4.5 39.1 1.0 O B:CYS216 4.6 47.2 1.0 CA B:CYS216 4.6 47.0 1.0 CA B:HIS310 4.7 35.5 1.0 CB B:LEU218 4.7 40.9 1.0 C B:CYS216 4.8 47.4 1.0 N B:HIS255 4.8 47.1 1.0 O B:PRO307 4.9 40.6 1.0 CA B:LEU218 4.9 43.0 1.0 C B:HIS255 4.9 47.8 1.0 N B:LEU218 5.0 42.7 1.0

J.G.Mccoy, A.Arabshahi, E.Bitto, C.A.Bingman, F.J.Ruzicka, P.A.Frey, G.N.Phillips Jr.. Structure and Mechanism of An Adp-Glucose Phosphorylase From Arabidopsis Thaliana Biochemistry V. 45 3154 2006.
ISSN: ISSN 0006-2960
PubMed: 16519510
DOI: 10.1021/BI052232M