Zinc in PDB 1zwj: X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200
Protein crystallography data
The structure of X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200, PDB code: 1zwj
was solved by
G.E.Wesenberg,
D.W.Smith,
G.N.Phillips Jr.,
J.G.Mccoy,
K.A.Johnson,
E.Bitto,
C.A.Bingman,
S.T.M.Allard,
Center For Eukaryotic Structuralgenomics (Cesg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
27.59 /
2.30
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
59.984,
95.535,
110.522,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
21.5 /
26.9
|
Zinc Binding Sites:
The binding sites of Zinc atom in the X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200
(pdb code 1zwj). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the
X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200, PDB code: 1zwj:
Jump to Zinc binding site number:
1;
2;
3;
4;
Zinc binding site 1 out
of 4 in 1zwj
Go back to
Zinc Binding Sites List in 1zwj
Zinc binding site 1 out
of 4 in the X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn400
b:57.1
occ:1.00
|
ND1
|
A:HIS133
|
2.3
|
54.7
|
1.0
|
ND1
|
A:HIS184
|
2.4
|
60.3
|
1.0
|
CB
|
A:CYS63
|
2.6
|
79.8
|
1.0
|
SG
|
A:CYS63
|
2.6
|
74.9
|
1.0
|
SG
|
A:CYS66
|
2.7
|
75.8
|
1.0
|
CG
|
A:HIS184
|
3.1
|
58.9
|
1.0
|
CE1
|
A:HIS184
|
3.2
|
60.5
|
1.0
|
CG
|
A:HIS133
|
3.3
|
56.4
|
1.0
|
CE1
|
A:HIS133
|
3.3
|
55.4
|
1.0
|
CB
|
A:HIS184
|
3.4
|
56.0
|
1.0
|
N
|
A:CYS66
|
3.5
|
79.9
|
1.0
|
CA
|
A:CYS63
|
3.5
|
80.8
|
1.0
|
CB
|
A:HIS133
|
3.5
|
59.0
|
1.0
|
O
|
A:CYS63
|
3.7
|
80.6
|
1.0
|
C
|
A:CYS63
|
3.7
|
80.7
|
1.0
|
N
|
A:CYS63
|
3.8
|
82.2
|
1.0
|
CB
|
A:CYS66
|
3.9
|
77.8
|
1.0
|
CA
|
A:CYS66
|
4.0
|
78.5
|
1.0
|
CD2
|
A:HIS184
|
4.0
|
59.5
|
1.0
|
N
|
A:PHE65
|
4.1
|
81.7
|
1.0
|
CB
|
A:PHE65
|
4.1
|
83.0
|
1.0
|
C
|
A:PHE65
|
4.1
|
80.9
|
1.0
|
NE2
|
A:HIS184
|
4.1
|
61.2
|
1.0
|
CA
|
A:HIS133
|
4.1
|
61.6
|
1.0
|
CA
|
A:PHE65
|
4.3
|
81.6
|
1.0
|
NE2
|
A:HIS133
|
4.3
|
55.5
|
1.0
|
CA
|
A:HIS184
|
4.3
|
54.8
|
1.0
|
CD2
|
A:HIS133
|
4.4
|
55.7
|
1.0
|
C
|
A:SER62
|
4.5
|
84.0
|
1.0
|
N
|
A:PRO64
|
4.7
|
80.4
|
1.0
|
N
|
A:HIS184
|
4.8
|
57.2
|
1.0
|
N
|
A:HIS133
|
4.9
|
60.4
|
1.0
|
O
|
A:SER62
|
4.9
|
84.1
|
1.0
|
O
|
A:PHE65
|
4.9
|
81.1
|
1.0
|
|
Zinc binding site 2 out
of 4 in 1zwj
Go back to
Zinc Binding Sites List in 1zwj
Zinc binding site 2 out
of 4 in the X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn401
b:45.3
occ:1.00
|
ND1
|
A:HIS255
|
2.2
|
50.6
|
1.0
|
ND1
|
A:HIS310
|
2.3
|
32.4
|
1.0
|
SG
|
A:CYS216
|
2.3
|
42.4
|
1.0
|
SG
|
A:CYS219
|
2.5
|
49.4
|
1.0
|
CE1
|
A:HIS255
|
3.0
|
49.1
|
1.0
|
CB
|
A:CYS216
|
3.1
|
44.9
|
1.0
|
CG
|
A:HIS255
|
3.1
|
50.5
|
1.0
|
CG
|
A:HIS310
|
3.2
|
33.3
|
1.0
|
CE1
|
A:HIS310
|
3.3
|
32.5
|
1.0
|
CB
|
A:CYS219
|
3.3
|
48.1
|
1.0
|
CB
|
A:HIS310
|
3.5
|
33.3
|
1.0
|
CB
|
A:HIS255
|
3.5
|
48.5
|
1.0
|
N
|
A:CYS219
|
3.5
|
46.1
|
1.0
|
CA
|
A:CYS219
|
3.8
|
48.5
|
1.0
|
CA
|
A:HIS255
|
4.0
|
47.9
|
1.0
|
NE2
|
A:HIS255
|
4.1
|
49.9
|
1.0
|
CD2
|
A:HIS255
|
4.1
|
50.6
|
1.0
|
C
|
A:LEU218
|
4.3
|
44.7
|
1.0
|
NE2
|
A:HIS310
|
4.4
|
33.5
|
1.0
|
CD2
|
A:HIS310
|
4.4
|
33.4
|
1.0
|
O
|
A:CYS216
|
4.4
|
50.0
|
1.0
|
CA
|
A:CYS216
|
4.5
|
46.4
|
1.0
|
CB
|
A:LEU218
|
4.6
|
43.9
|
1.0
|
C
|
A:CYS216
|
4.7
|
47.6
|
1.0
|
CA
|
A:HIS310
|
4.8
|
32.9
|
1.0
|
CA
|
A:LEU218
|
4.8
|
44.4
|
1.0
|
O
|
A:PRO307
|
4.8
|
42.9
|
1.0
|
N
|
A:LEU218
|
4.9
|
42.7
|
1.0
|
O
|
A:HOH411
|
5.0
|
55.3
|
1.0
|
|
Zinc binding site 3 out
of 4 in 1zwj
Go back to
Zinc Binding Sites List in 1zwj
Zinc binding site 3 out
of 4 in the X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn402
b:63.9
occ:1.00
|
ND1
|
B:HIS184
|
2.3
|
60.7
|
1.0
|
ND1
|
B:HIS133
|
2.4
|
70.6
|
1.0
|
SG
|
B:CYS66
|
2.7
|
83.2
|
1.0
|
SG
|
B:CYS63
|
2.7
|
79.5
|
1.0
|
CB
|
B:CYS63
|
2.8
|
83.5
|
1.0
|
CE1
|
B:HIS184
|
2.9
|
59.8
|
1.0
|
CG
|
B:HIS184
|
3.2
|
59.2
|
1.0
|
CG
|
B:HIS133
|
3.3
|
70.0
|
1.0
|
O
|
B:CYS63
|
3.4
|
83.4
|
1.0
|
CE1
|
B:HIS133
|
3.4
|
72.0
|
1.0
|
CA
|
B:CYS63
|
3.5
|
83.3
|
1.0
|
N
|
B:CYS66
|
3.5
|
86.2
|
1.0
|
CB
|
B:HIS133
|
3.5
|
66.4
|
1.0
|
C
|
B:CYS63
|
3.6
|
83.5
|
1.0
|
N
|
B:CYS63
|
3.7
|
84.2
|
1.0
|
CB
|
B:HIS184
|
3.8
|
57.3
|
1.0
|
CB
|
B:CYS66
|
3.8
|
86.3
|
1.0
|
NE2
|
B:HIS184
|
3.9
|
59.7
|
1.0
|
C
|
B:PHE65
|
3.9
|
85.2
|
1.0
|
N
|
B:PHE65
|
4.0
|
83.8
|
1.0
|
CB
|
B:PHE65
|
4.0
|
86.3
|
1.0
|
CA
|
B:CYS66
|
4.0
|
86.8
|
1.0
|
CD2
|
B:HIS184
|
4.1
|
60.2
|
1.0
|
CA
|
B:HIS133
|
4.1
|
64.1
|
1.0
|
CA
|
B:PHE65
|
4.2
|
84.6
|
1.0
|
C
|
B:SER62
|
4.4
|
85.5
|
1.0
|
CD2
|
B:HIS133
|
4.5
|
71.9
|
1.0
|
NE2
|
B:HIS133
|
4.5
|
72.2
|
1.0
|
N
|
B:PRO64
|
4.6
|
83.2
|
1.0
|
O
|
B:PHE65
|
4.7
|
85.3
|
1.0
|
CA
|
B:HIS184
|
4.7
|
56.1
|
1.0
|
N
|
B:HIS133
|
4.8
|
62.2
|
1.0
|
CB
|
B:SER62
|
4.8
|
86.8
|
1.0
|
O
|
B:SER62
|
5.0
|
85.5
|
1.0
|
|
Zinc binding site 4 out
of 4 in 1zwj
Go back to
Zinc Binding Sites List in 1zwj
Zinc binding site 4 out
of 4 in the X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of X-Ray Structure of Galt-Like Protein From Arabidopsis Thaliana AT5G18200 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn403
b:45.4
occ:1.00
|
ND1
|
B:HIS255
|
2.3
|
46.6
|
1.0
|
SG
|
B:CYS216
|
2.3
|
45.3
|
1.0
|
ND1
|
B:HIS310
|
2.4
|
36.5
|
1.0
|
SG
|
B:CYS219
|
2.5
|
48.1
|
1.0
|
CG
|
B:HIS255
|
3.2
|
46.4
|
1.0
|
CB
|
B:CYS216
|
3.2
|
45.9
|
1.0
|
CG
|
B:HIS310
|
3.2
|
36.6
|
1.0
|
CE1
|
B:HIS255
|
3.3
|
47.9
|
1.0
|
CE1
|
B:HIS310
|
3.4
|
38.4
|
1.0
|
CB
|
B:CYS219
|
3.4
|
48.5
|
1.0
|
CB
|
B:HIS255
|
3.4
|
46.3
|
1.0
|
CB
|
B:HIS310
|
3.4
|
34.9
|
1.0
|
N
|
B:CYS219
|
3.6
|
46.8
|
1.0
|
CA
|
B:CYS219
|
3.8
|
48.2
|
1.0
|
CA
|
B:HIS255
|
3.9
|
46.9
|
1.0
|
CD2
|
B:HIS255
|
4.4
|
45.8
|
1.0
|
C
|
B:LEU218
|
4.4
|
44.7
|
1.0
|
NE2
|
B:HIS255
|
4.4
|
47.8
|
1.0
|
CD2
|
B:HIS310
|
4.4
|
36.8
|
1.0
|
NE2
|
B:HIS310
|
4.5
|
39.1
|
1.0
|
O
|
B:CYS216
|
4.6
|
47.2
|
1.0
|
CA
|
B:CYS216
|
4.6
|
47.0
|
1.0
|
CA
|
B:HIS310
|
4.7
|
35.5
|
1.0
|
CB
|
B:LEU218
|
4.7
|
40.9
|
1.0
|
C
|
B:CYS216
|
4.8
|
47.4
|
1.0
|
N
|
B:HIS255
|
4.8
|
47.1
|
1.0
|
O
|
B:PRO307
|
4.9
|
40.6
|
1.0
|
CA
|
B:LEU218
|
4.9
|
43.0
|
1.0
|
C
|
B:HIS255
|
4.9
|
47.8
|
1.0
|
N
|
B:LEU218
|
5.0
|
42.7
|
1.0
|
|
Reference:
J.G.Mccoy,
A.Arabshahi,
E.Bitto,
C.A.Bingman,
F.J.Ruzicka,
P.A.Frey,
G.N.Phillips Jr..
Structure and Mechanism of An Adp-Glucose Phosphorylase From Arabidopsis Thaliana Biochemistry V. 45 3154 2006.
ISSN: ISSN 0006-2960
PubMed: 16519510
DOI: 10.1021/BI052232M
Page generated: Wed Oct 16 21:23:30 2024
|