Zinc in PDB 1zu1: Solution Structure of the N-Terminal Zinc Fingers of the Xenopus Laevis Double Stranded Rna Binding Protein Zfa
Zinc Binding Sites:
The binding sites of Zinc atom in the Solution Structure of the N-Terminal Zinc Fingers of the Xenopus Laevis Double Stranded Rna Binding Protein Zfa
(pdb code 1zu1). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
Solution Structure of the N-Terminal Zinc Fingers of the Xenopus Laevis Double Stranded Rna Binding Protein Zfa, PDB code: 1zu1:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 1zu1
Go back to
Zinc Binding Sites List in 1zu1
Zinc binding site 1 out
of 2 in the Solution Structure of the N-Terminal Zinc Fingers of the Xenopus Laevis Double Stranded Rna Binding Protein Zfa
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Solution Structure of the N-Terminal Zinc Fingers of the Xenopus Laevis Double Stranded Rna Binding Protein Zfa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn129
b:1.0
occ:1.00
|
NE2
|
A:HIS52
|
2.1
|
1.0
|
1.0
|
ND1
|
A:HIS58
|
2.1
|
1.0
|
1.0
|
SG
|
A:CYS39
|
2.3
|
1.0
|
1.0
|
SG
|
A:CYS36
|
2.3
|
1.0
|
1.0
|
HB2
|
A:CYS39
|
2.6
|
1.0
|
1.0
|
CD2
|
A:HIS52
|
2.9
|
1.0
|
1.0
|
CE1
|
A:HIS58
|
2.9
|
1.0
|
1.0
|
CB
|
A:CYS39
|
3.0
|
1.0
|
1.0
|
HD2
|
A:HIS52
|
3.0
|
1.0
|
1.0
|
HE1
|
A:HIS58
|
3.0
|
1.0
|
1.0
|
CE1
|
A:HIS52
|
3.2
|
1.0
|
1.0
|
CG
|
A:HIS58
|
3.3
|
1.0
|
1.0
|
HB3
|
A:CYS36
|
3.4
|
1.0
|
1.0
|
CB
|
A:CYS36
|
3.4
|
1.0
|
1.0
|
H
|
A:CYS39
|
3.4
|
1.0
|
1.0
|
HB2
|
A:HIS58
|
3.5
|
1.0
|
1.0
|
HE1
|
A:HIS52
|
3.6
|
1.0
|
1.0
|
HB2
|
A:CYS36
|
3.6
|
1.0
|
1.0
|
HB3
|
A:CYS39
|
3.6
|
1.0
|
1.0
|
HA
|
A:HIS58
|
3.8
|
1.0
|
1.0
|
CB
|
A:HIS58
|
3.8
|
1.0
|
1.0
|
HB
|
A:VAL38
|
3.9
|
1.0
|
1.0
|
N
|
A:CYS39
|
4.0
|
1.0
|
1.0
|
CG
|
A:HIS52
|
4.2
|
1.0
|
1.0
|
CA
|
A:CYS39
|
4.2
|
1.0
|
1.0
|
NE2
|
A:HIS58
|
4.2
|
1.0
|
1.0
|
ND1
|
A:HIS52
|
4.3
|
1.0
|
1.0
|
CD2
|
A:HIS58
|
4.3
|
1.0
|
1.0
|
CA
|
A:HIS58
|
4.4
|
1.0
|
1.0
|
HE1
|
A:TYR53
|
4.5
|
1.0
|
1.0
|
HG22
|
A:VAL62
|
4.5
|
1.0
|
1.0
|
HE1
|
A:PHE31
|
4.5
|
1.0
|
1.0
|
HG13
|
A:VAL38
|
4.6
|
1.0
|
1.0
|
HA
|
A:CYS39
|
4.8
|
1.0
|
1.0
|
CA
|
A:CYS36
|
4.8
|
1.0
|
1.0
|
HD1
|
A:TYR53
|
4.8
|
1.0
|
1.0
|
HB3
|
A:LYS61
|
4.8
|
1.0
|
1.0
|
HB3
|
A:HIS58
|
4.8
|
1.0
|
1.0
|
CB
|
A:VAL38
|
4.9
|
1.0
|
1.0
|
CE1
|
A:TYR53
|
4.9
|
1.0
|
1.0
|
C
|
A:VAL38
|
5.0
|
1.0
|
1.0
|
|
Zinc binding site 2 out
of 2 in 1zu1
Go back to
Zinc Binding Sites List in 1zu1
Zinc binding site 2 out
of 2 in the Solution Structure of the N-Terminal Zinc Fingers of the Xenopus Laevis Double Stranded Rna Binding Protein Zfa
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Solution Structure of the N-Terminal Zinc Fingers of the Xenopus Laevis Double Stranded Rna Binding Protein Zfa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn130
b:1.0
occ:1.00
|
NE2
|
A:HIS113
|
2.1
|
1.0
|
1.0
|
ND1
|
A:HIS119
|
2.1
|
1.0
|
1.0
|
SG
|
A:CYS100
|
2.3
|
1.0
|
1.0
|
SG
|
A:CYS97
|
2.3
|
1.0
|
1.0
|
CE1
|
A:HIS113
|
2.9
|
1.0
|
1.0
|
CE1
|
A:HIS119
|
3.0
|
1.0
|
1.0
|
HE1
|
A:HIS113
|
3.0
|
1.0
|
1.0
|
HA
|
A:HIS119
|
3.1
|
1.0
|
1.0
|
HE1
|
A:HIS119
|
3.1
|
1.0
|
1.0
|
CG
|
A:HIS119
|
3.2
|
1.0
|
1.0
|
CD2
|
A:HIS113
|
3.2
|
1.0
|
1.0
|
HB2
|
A:CYS100
|
3.4
|
1.0
|
1.0
|
HB
|
A:VAL99
|
3.4
|
1.0
|
1.0
|
CB
|
A:CYS97
|
3.5
|
1.0
|
1.0
|
HB3
|
A:CYS97
|
3.5
|
1.0
|
1.0
|
HB2
|
A:HIS119
|
3.5
|
1.0
|
1.0
|
CB
|
A:CYS100
|
3.5
|
1.0
|
1.0
|
H
|
A:CYS100
|
3.6
|
1.0
|
1.0
|
HD2
|
A:HIS113
|
3.6
|
1.0
|
1.0
|
HB2
|
A:CYS97
|
3.7
|
1.0
|
1.0
|
CB
|
A:HIS119
|
3.7
|
1.0
|
1.0
|
CA
|
A:HIS119
|
3.9
|
1.0
|
1.0
|
N
|
A:CYS100
|
4.1
|
1.0
|
1.0
|
ND1
|
A:HIS113
|
4.1
|
1.0
|
1.0
|
HZ
|
A:PHE104
|
4.2
|
1.0
|
1.0
|
NE2
|
A:HIS119
|
4.2
|
1.0
|
1.0
|
HB3
|
A:CYS100
|
4.3
|
1.0
|
1.0
|
CG
|
A:HIS113
|
4.3
|
1.0
|
1.0
|
CD2
|
A:HIS119
|
4.3
|
1.0
|
1.0
|
HB2
|
A:ASN122
|
4.4
|
1.0
|
1.0
|
CB
|
A:VAL99
|
4.5
|
1.0
|
1.0
|
CA
|
A:CYS100
|
4.5
|
1.0
|
1.0
|
CE1
|
A:TYR114
|
4.6
|
1.0
|
1.0
|
HE1
|
A:TYR114
|
4.6
|
1.0
|
1.0
|
HE2
|
A:MET102
|
4.7
|
1.0
|
1.0
|
HA
|
A:TYR114
|
4.8
|
1.0
|
1.0
|
HB3
|
A:HIS119
|
4.8
|
1.0
|
1.0
|
N
|
A:HIS119
|
4.8
|
1.0
|
1.0
|
H
|
A:VAL99
|
4.8
|
1.0
|
1.0
|
CA
|
A:CYS97
|
4.8
|
1.0
|
1.0
|
CD1
|
A:TYR114
|
4.9
|
1.0
|
1.0
|
CZ
|
A:TYR114
|
4.9
|
1.0
|
1.0
|
O
|
A:HIS119
|
4.9
|
1.0
|
1.0
|
C
|
A:HIS119
|
4.9
|
1.0
|
1.0
|
C
|
A:VAL99
|
4.9
|
1.0
|
1.0
|
|
Reference:
H.M.Moller,
M.A.Martinez-Yamout,
H.J.Dyson,
P.E.Wright.
Solution Structure of the N-Terminal Zinc Fingers of the Xenopus Laevis Double-Stranded Rna-Binding Protein Zfa J.Mol.Biol. V. 351 718 2005.
ISSN: ISSN 0022-2836
PubMed: 16051273
DOI: 10.1016/J.JMB.2005.06.032
Page generated: Wed Oct 16 21:22:14 2024
|