Zinc in PDB 1yxp: Hiv-1 Dis Rna Subtype F- Zn Soaked

The structure of Hiv-1 Dis Rna Subtype F- Zn Soaked, PDB code: 1yxp was solved by E.Ennifar, P.Dumas, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	7.98 / 2.40
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	27.275, 118.629, 93.334, 90.00, 90.00, 90.00
R / Rfree (%)	27 / 30.3

The structure of Hiv-1 Dis Rna Subtype F- Zn Soaked also contains other interesting chemical elements:

Bromine

(Br)

2 atoms

The binding sites of Zinc atom in the Hiv-1 Dis Rna Subtype F- Zn Soaked (pdb code 1yxp). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Hiv-1 Dis Rna Subtype F- Zn Soaked, PDB code: 1yxp:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Hiv-1 Dis Rna Subtype F- Zn Soaked


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Hiv-1 Dis Rna Subtype F- Zn Soaked within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn100 b:50.9 occ:0.75 N7 A:G10 2.3 44.0 1.0 C8 A:G10 3.2 44.2 1.0 C5 A:G10 3.5 41.8 1.0 O6 A:G10 3.8 38.9 1.0 C6 A:G10 4.0 41.1 1.0 N1 B:A16 4.4 41.6 1.0 OP1 A:G10 4.4 45.0 1.0 N9 A:G10 4.5 44.2 1.0 C4 A:G10 4.6 42.7 1.0 C2 B:A16 4.8 41.2 1.0

Zinc binding site 2 out of 2 in the Hiv-1 Dis Rna Subtype F- Zn Soaked


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Hiv-1 Dis Rna Subtype F- Zn Soaked within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn101 b:55.0 occ:0.77 N7 B:G10 2.3 46.4 1.0 C8 B:G10 3.2 48.1 1.0 C5 B:G10 3.3 46.5 1.0 O6 B:G10 3.6 41.4 1.0 C6 B:G10 3.8 46.0 1.0 N1 A:A16 4.4 47.3 1.0 N9 B:G10 4.4 48.2 1.0 C4 B:G10 4.5 46.5 1.0 OP1 B:G10 4.5 48.3 1.0 C2 A:A16 4.9 46.9 1.0

E.Ennifar, P.Dumas. Polymorphism of Bulged-Out Residues in Hiv-1 Rna Dis Kissing Complex and Structure Comparison with Solution Studies. J.Mol.Biol. V. 356 771 2006.
ISSN: ISSN 0022-2836
PubMed: 16403527
DOI: 10.1016/J.JMB.2005.12.022