Zinc in PDB 1xyd: uc(Nmr) Solution Structure of Rat Zinc-Calcium-S100B, 20 Structures

The structure of uc(Nmr) Solution Structure of Rat Zinc-Calcium-S100B, 20 Structures also contains other interesting chemical elements:

Calcium

(Ca)

80 atoms

The binding sites of Zinc atom in the uc(Nmr) Solution Structure of Rat Zinc-Calcium-S100B, 20 Structures (pdb code 1xyd). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the uc(Nmr) Solution Structure of Rat Zinc-Calcium-S100B, 20 Structures, PDB code: 1xyd:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the uc(Nmr) Solution Structure of Rat Zinc-Calcium-S100B, 20 Structures


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of uc(Nmr) Solution Structure of Rat Zinc-Calcium-S100B, 20 Structures within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn94 b:0.0 occ:1.00 HE1 A:HIS25 1.7 0.0 1.0 HD2 A:HIS15 1.8 0.0 1.0 CD2 A:HIS15 1.9 0.0 1.0 NE2 B:HIS85 2.0 0.0 1.0 NE2 A:HIS15 2.0 0.0 1.0 ND1 A:HIS25 2.0 0.0 1.0 CE1 A:HIS25 2.0 0.0 1.0 OE1 B:GLU89 2.1 0.0 1.0 CD B:GLU89 2.8 0.0 1.0 CE1 B:HIS85 2.9 0.0 1.0 OE2 B:GLU89 2.9 0.0 1.0 CD2 B:HIS85 3.1 0.0 1.0 HE1 B:HIS85 3.1 0.0 1.0 CG A:HIS15 3.1 0.0 1.0 CE1 A:HIS15 3.2 0.0 1.0 NE2 A:HIS25 3.3 0.0 1.0 CG A:HIS25 3.4 0.0 1.0 HD2 B:HIS85 3.4 0.0 1.0 O A:LYS24 3.6 0.0 1.0 ND1 A:HIS15 3.7 0.0 1.0 CD2 A:HIS25 3.9 0.0 1.0 HE1 A:HIS15 3.9 0.0 1.0 HE2 A:HIS25 4.0 0.0 1.0 ND1 B:HIS85 4.0 0.0 1.0 HD2 A:LYS24 4.0 0.0 1.0 CG B:HIS85 4.1 0.0 1.0 HB2 A:HIS15 4.2 0.0 1.0 CB A:HIS15 4.2 0.0 1.0 HB3 A:HIS25 4.2 0.0 1.0 HA A:HIS15 4.3 0.0 1.0 CG B:GLU89 4.3 0.0 1.0 CB A:HIS25 4.4 0.0 1.0 HB3 B:GLU89 4.5 0.0 1.0 HA A:HIS25 4.5 0.0 1.0 HB2 B:GLU89 4.5 0.0 1.0 HB3 A:LYS24 4.5 0.0 1.0 HD1 A:HIS15 4.6 0.0 1.0 C A:LYS24 4.7 0.0 1.0 CB B:GLU89 4.7 0.0 1.0 HD3 A:LYS24 4.7 0.0 1.0 HE2 A:PHE14 4.8 0.0 1.0 HG3 B:GLU89 4.8 0.0 1.0 CA A:HIS15 4.9 0.0 1.0 HD1 B:HIS85 4.9 0.0 1.0 CD A:LYS24 4.9 0.0 1.0 HG2 B:GLU89 4.9 0.0 1.0 CA A:HIS25 4.9 0.0 1.0 O B:HIS85 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the uc(Nmr) Solution Structure of Rat Zinc-Calcium-S100B, 20 Structures


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of uc(Nmr) Solution Structure of Rat Zinc-Calcium-S100B, 20 Structures within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn94 b:0.0 occ:1.00 HE1 B:HIS25 1.7 0.0 1.0 HD2 B:HIS15 1.8 0.0 1.0 CD2 B:HIS15 1.9 0.0 1.0 NE2 A:HIS85 2.0 0.0 1.0 ND1 B:HIS25 2.0 0.0 1.0 NE2 B:HIS15 2.0 0.0 1.0 CE1 B:HIS25 2.0 0.0 1.0 OE1 A:GLU89 2.1 0.0 1.0 CD A:GLU89 2.8 0.0 1.0 CE1 A:HIS85 2.9 0.0 1.0 OE2 A:GLU89 2.9 0.0 1.0 CD2 A:HIS85 3.0 0.0 1.0 HE1 A:HIS85 3.1 0.0 1.0 CG B:HIS15 3.1 0.0 1.0 CE1 B:HIS15 3.2 0.0 1.0 NE2 B:HIS25 3.3 0.0 1.0 CG B:HIS25 3.4 0.0 1.0 HD2 A:HIS85 3.4 0.0 1.0 O B:LYS24 3.6 0.0 1.0 ND1 B:HIS15 3.7 0.0 1.0 CD2 B:HIS25 3.9 0.0 1.0 HE1 B:HIS15 3.9 0.0 1.0 HE2 B:HIS25 4.0 0.0 1.0 ND1 A:HIS85 4.0 0.0 1.0 HD2 B:LYS24 4.0 0.0 1.0 CG A:HIS85 4.1 0.0 1.0 HB2 B:HIS15 4.2 0.0 1.0 HB3 B:HIS25 4.2 0.0 1.0 CB B:HIS15 4.2 0.0 1.0 HA B:HIS15 4.3 0.0 1.0 CG A:GLU89 4.3 0.0 1.0 CB B:HIS25 4.4 0.0 1.0 HB3 A:GLU89 4.5 0.0 1.0 HA B:HIS25 4.5 0.0 1.0 HB2 A:GLU89 4.5 0.0 1.0 HB3 B:LYS24 4.5 0.0 1.0 HD1 B:HIS15 4.6 0.0 1.0 C B:LYS24 4.7 0.0 1.0 CB A:GLU89 4.7 0.0 1.0 HD3 B:LYS24 4.7 0.0 1.0 HE2 B:PHE14 4.8 0.0 1.0 HG3 A:GLU89 4.8 0.0 1.0 CA B:HIS15 4.9 0.0 1.0 HD1 A:HIS85 4.9 0.0 1.0 CD B:LYS24 4.9 0.0 1.0 HG2 A:GLU89 4.9 0.0 1.0 CA B:HIS25 4.9 0.0 1.0 O A:HIS85 4.9 0.0 1.0 HZ2 B:LYS24 5.0 0.0 1.0

P.T.Wilder, K.M.Varney, M.B.Weiss, R.K.Gitti, D.J.Weber. Solution Structure of Zinc- and Calcium-Bound Rat S100B As Determined By Nuclear Magnetic Resonance Spectroscopy Biochemistry V. 44 5690 2005.
ISSN: ISSN 0006-2960
PubMed: 15823027
DOI: 10.1021/BI0475830