Atomistry » Zinc » PDB 1xuj-1y7w » 1xv2
Atomistry »
  Zinc »
    PDB 1xuj-1y7w »
      1xv2 »

Zinc in PDB 1xv2: Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus

Enzymatic activity of Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus

All present enzymatic activity of Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus:
4.1.1.5;

Protein crystallography data

The structure of Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus, PDB code: 1xv2 was solved by N.E.C.Duke, R.Zhang, P.Quartey, F.Collart, D.Holzle, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.24 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 48.434, 160.005, 68.056, 90.00, 107.55, 90.00
R / Rfree (%) 19.1 / 23.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus (pdb code 1xv2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus, PDB code: 1xv2:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 1xv2

Go back to Zinc Binding Sites List in 1xv2
Zinc binding site 1 out of 4 in the Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn801

b:17.5
occ:1.00
NE2 A:HIS175 2.3 10.7 1.0
NE2 A:HIS173 2.3 18.1 1.0
ND1 A:HIS186 2.3 13.0 1.0
O A:HOH802 2.4 14.6 1.0
O A:HOH857 2.5 12.8 1.0
O A:HOH888 2.5 18.2 1.0
CE1 A:HIS186 3.0 13.2 1.0
CE1 A:HIS173 3.2 21.3 1.0
CD2 A:HIS175 3.2 11.9 1.0
CE1 A:HIS175 3.2 12.4 1.0
CD2 A:HIS173 3.3 18.7 1.0
CG A:HIS186 3.4 12.3 1.0
CB A:HIS186 3.8 12.3 1.0
OE1 A:GLU45 3.8 12.3 1.0
NH2 A:ARG124 4.0 14.7 1.0
OE1 A:GLU234 4.1 45.1 1.0
NE2 A:HIS186 4.2 13.7 1.0
ND1 A:HIS173 4.3 20.6 1.0
O A:HOH889 4.3 32.1 1.0
ND1 A:HIS175 4.3 13.5 1.0
CD2 A:HIS186 4.4 13.6 1.0
CG A:HIS175 4.4 13.2 1.0
CG A:HIS173 4.4 18.9 1.0
CD A:GLU234 4.7 44.4 1.0
CA A:HIS186 4.7 13.4 1.0
CD A:GLU45 4.8 13.5 1.0
CD1 A:ILE36 4.9 17.0 1.0
CZ A:ARG124 5.0 16.3 1.0
NE A:ARG124 5.0 15.3 1.0

Zinc binding site 2 out of 4 in 1xv2

Go back to Zinc Binding Sites List in 1xv2
Zinc binding site 2 out of 4 in the Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn802

b:29.5
occ:1.00
NE2 B:HIS175 2.3 18.4 1.0
O B:HOH864 2.3 23.4 1.0
ND1 B:HIS186 2.3 18.8 1.0
NE2 B:HIS173 2.3 21.8 1.0
O B:HOH815 2.6 22.0 1.0
O B:HOH842 2.8 28.3 1.0
CE1 B:HIS186 3.1 19.6 1.0
CE1 B:HIS175 3.3 19.2 1.0
CD2 B:HIS175 3.3 16.7 1.0
CE1 B:HIS173 3.3 22.3 1.0
CD2 B:HIS173 3.3 22.3 1.0
OE1 B:GLU45 3.3 35.6 1.0
CG B:HIS186 3.4 18.4 1.0
CB B:HIS186 3.8 20.3 1.0
NH2 B:ARG124 4.0 29.1 1.0
NE2 B:HIS186 4.3 19.0 1.0
ND1 B:HIS175 4.4 19.3 1.0
ND1 B:HIS173 4.4 22.1 1.0
CG B:HIS175 4.4 16.7 1.0
CD2 B:HIS186 4.5 18.1 1.0
CG B:HIS173 4.5 20.9 1.0
CD B:GLU45 4.5 35.8 1.0
CA B:HIS186 4.7 20.5 1.0
O B:GLU234 4.9 58.9 1.0

Zinc binding site 3 out of 4 in 1xv2

Go back to Zinc Binding Sites List in 1xv2
Zinc binding site 3 out of 4 in the Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn803

b:10.2
occ:1.00
NE2 C:HIS173 2.2 7.3 1.0
NE2 C:HIS175 2.3 3.3 1.0
ND1 C:HIS186 2.3 1.8 1.0
O C:HOH831 2.3 15.9 1.0
O C:HOH960 2.4 13.3 1.0
O C:HOH959 2.6 14.7 1.0
CE1 C:HIS186 3.1 3.7 1.0
CE1 C:HIS173 3.2 10.4 1.0
CD2 C:HIS175 3.2 3.5 1.0
CD2 C:HIS173 3.2 6.7 1.0
CE1 C:HIS175 3.3 5.8 1.0
CG C:HIS186 3.4 2.3 1.0
OE1 C:GLU45 3.8 7.8 1.0
CB C:HIS186 3.8 2.1 1.0
NH2 C:ARG124 4.1 11.0 1.0
OE1 C:GLU234 4.2 31.7 1.0
NE2 C:HIS186 4.3 3.5 1.0
ND1 C:HIS173 4.3 9.7 1.0
CG C:HIS173 4.4 10.2 1.0
CG C:HIS175 4.4 5.2 1.0
ND1 C:HIS175 4.4 6.7 1.0
CD2 C:HIS186 4.4 2.4 1.0
CA C:HIS186 4.7 3.8 1.0
CD C:GLU45 4.8 5.7 1.0
OE2 C:GLU234 5.0 30.1 1.0

Zinc binding site 4 out of 4 in 1xv2

Go back to Zinc Binding Sites List in 1xv2
Zinc binding site 4 out of 4 in the Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn804

b:12.5
occ:1.00
NE2 D:HIS173 2.2 9.9 1.0
NE2 D:HIS175 2.3 3.9 1.0
ND1 D:HIS186 2.3 4.6 1.0
O D:HOH820 2.4 13.1 1.0
O D:HOH1025 2.5 20.6 1.0
O D:HOH1024 2.6 13.8 1.0
CE1 D:HIS186 3.1 5.3 1.0
CE1 D:HIS173 3.2 8.7 1.0
CE1 D:HIS175 3.2 5.2 1.0
CD2 D:HIS173 3.2 10.9 1.0
CD2 D:HIS175 3.2 2.8 1.0
CG D:HIS186 3.4 4.4 1.0
OE1 D:GLU45 3.7 9.5 1.0
CB D:HIS186 3.8 5.1 1.0
NH2 D:ARG124 4.1 10.4 1.0
O D:HOH1015 4.2 22.7 1.0
NE2 D:HIS186 4.3 7.9 1.0
ND1 D:HIS173 4.3 10.6 1.0
ND1 D:HIS175 4.3 5.0 1.0
CG D:HIS173 4.4 10.2 1.0
CG D:HIS175 4.4 4.8 1.0
CD2 D:HIS186 4.4 5.0 1.0
CA D:HIS186 4.7 6.0 1.0
CD D:GLU45 4.8 10.3 1.0
CZ D:ARG124 5.0 14.5 1.0

Reference:

N.E.C.Duke, R.Zhang, P.Quartey, F.Collart, D.Holzle, A.Joachimiak. Crystal Structure of A Hypothetical Protein Similar to Alpha-Acetolactate To Be Published.
Page generated: Wed Dec 16 03:13:19 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy