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Zinc in PDB 1x4u: Solution Structure of the Fyve Domain From Human Fyve Domain Containing 27 Isoform B Protein

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the Fyve Domain From Human Fyve Domain Containing 27 Isoform B Protein (pdb code 1x4u). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Fyve Domain From Human Fyve Domain Containing 27 Isoform B Protein, PDB code: 1x4u:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1x4u

Go back to Zinc Binding Sites List in 1x4u
Zinc binding site 1 out of 2 in the Solution Structure of the Fyve Domain From Human Fyve Domain Containing 27 Isoform B Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Fyve Domain From Human Fyve Domain Containing 27 Isoform B Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
SG A:CYS20 2.3 0.0 1.0
SG A:CYS44 2.3 0.0 1.0
SG A:CYS17 2.3 0.0 1.0
SG A:CYS41 2.4 0.0 1.0
H A:CYS20 2.8 0.0 1.0
HB2 A:CYS44 2.9 0.0 1.0
H A:CYS41 2.9 0.0 1.0
CB A:CYS44 3.3 0.0 1.0
CB A:CYS17 3.3 0.0 1.0
HB3 A:CYS17 3.3 0.0 1.0
HB3 A:CYS41 3.4 0.0 1.0
HB2 A:CYS17 3.4 0.0 1.0
HB3 A:CYS20 3.5 0.0 1.0
CB A:CYS41 3.5 0.0 1.0
CB A:CYS20 3.5 0.0 1.0
N A:CYS20 3.5 0.0 1.0
H A:CYS44 3.8 0.0 1.0
N A:CYS41 3.8 0.0 1.0
HB3 A:CYS44 4.0 0.0 1.0
H A:GLY19 4.0 0.0 1.0
HD1 A:PHE40 4.0 0.0 1.0
HA3 A:GLY19 4.0 0.0 1.0
CA A:CYS20 4.1 0.0 1.0
HB3 A:ALA22 4.1 0.0 1.0
N A:CYS44 4.2 0.0 1.0
CA A:CYS41 4.3 0.0 1.0
HB3 A:PHE40 4.3 0.0 1.0
H A:ALA22 4.3 0.0 1.0
CA A:CYS44 4.3 0.0 1.0
HB2 A:CYS41 4.4 0.0 1.0
HB2 A:ARG43 4.4 0.0 1.0
HB2 A:CYS20 4.4 0.0 1.0
C A:GLY19 4.4 0.0 1.0
HA A:PHE40 4.5 0.0 1.0
H A:SER21 4.5 0.0 1.0
CA A:GLY19 4.5 0.0 1.0
N A:GLY19 4.6 0.0 1.0
H A:ARG43 4.7 0.0 1.0
CA A:CYS17 4.8 0.0 1.0
HA A:CYS44 4.8 0.0 1.0
C A:CYS20 4.8 0.0 1.0
N A:SER21 4.9 0.0 1.0
C A:PHE40 4.9 0.0 1.0
HA A:CYS20 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 1x4u

Go back to Zinc Binding Sites List in 1x4u
Zinc binding site 2 out of 2 in the Solution Structure of the Fyve Domain From Human Fyve Domain Containing 27 Isoform B Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Fyve Domain From Human Fyve Domain Containing 27 Isoform B Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
SG A:CYS72 2.3 0.0 1.0
SG A:CYS69 2.3 0.0 1.0
SG A:CYS36 2.3 0.0 1.0
SG A:CYS33 2.3 0.0 1.0
H A:CYS69 2.9 0.0 1.0
H A:CYS36 3.0 0.0 1.0
HB3 A:CYS36 3.0 0.0 1.0
HE2 A:PHE40 3.0 0.0 1.0
HB2 A:CYS72 3.0 0.0 1.0
HB2 A:CYS33 3.1 0.0 1.0
CB A:CYS33 3.2 0.0 1.0
CB A:CYS36 3.3 0.0 1.0
CB A:CYS72 3.3 0.0 1.0
HB3 A:CYS33 3.4 0.0 1.0
HB3 A:CYS69 3.5 0.0 1.0
CB A:CYS69 3.5 0.0 1.0
CE2 A:PHE40 3.7 0.0 1.0
N A:CYS69 3.8 0.0 1.0
HB3 A:ASN35 3.8 0.0 1.0
N A:CYS36 3.8 0.0 1.0
HZ A:PHE40 3.9 0.0 1.0
H A:GLY37 3.9 0.0 1.0
H A:CYS72 3.9 0.0 1.0
HB3 A:CYS72 4.0 0.0 1.0
HB A:VAL68 4.0 0.0 1.0
CZ A:PHE40 4.1 0.0 1.0
HB2 A:CYS36 4.1 0.0 1.0
CA A:CYS36 4.1 0.0 1.0
H A:ASN38 4.1 0.0 1.0
CA A:CYS69 4.2 0.0 1.0
HD21 A:ASN35 4.2 0.0 1.0
O A:CYS69 4.3 0.0 1.0
HB2 A:CYS69 4.4 0.0 1.0
H A:ASN35 4.4 0.0 1.0
N A:CYS72 4.4 0.0 1.0
CA A:CYS72 4.5 0.0 1.0
HB2 A:ASN38 4.5 0.0 1.0
HD21 A:ASN38 4.6 0.0 1.0
N A:GLY37 4.6 0.0 1.0
CD2 A:PHE40 4.6 0.0 1.0
HB2 A:SER71 4.7 0.0 1.0
HA A:VAL68 4.7 0.0 1.0
CA A:CYS33 4.7 0.0 1.0
C A:CYS69 4.7 0.0 1.0
HD2 A:PHE40 4.8 0.0 1.0
ND2 A:ASN38 4.8 0.0 1.0
CB A:ASN35 4.8 0.0 1.0
H A:SER34 4.8 0.0 1.0
C A:CYS36 4.9 0.0 1.0
HA A:CYS33 4.9 0.0 1.0
C A:VAL68 4.9 0.0 1.0
HA A:CYS72 4.9 0.0 1.0
CB A:VAL68 4.9 0.0 1.0
C A:ASN35 5.0 0.0 1.0

Reference:

T.Tomizawa, T.Kigawa, S.Koshiba, M.Inoue, S.Yokoyama. Solution Structure of the Fyve Domain From Human Fyve Domain Containing 27 Isoform B Protein To Be Published.
Page generated: Wed Dec 16 03:11:13 2020

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