Zinc in PDB 1wjd: Solution Structure of the N-Terminal Zn Binding Domain of Hiv-1 Integrase (E Form), uc(Nmr), 38 Structures

The binding sites of Zinc atom in the Solution Structure of the N-Terminal Zn Binding Domain of Hiv-1 Integrase (E Form), uc(Nmr), 38 Structures (pdb code 1wjd). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the N-Terminal Zn Binding Domain of Hiv-1 Integrase (E Form), uc(Nmr), 38 Structures, PDB code: 1wjd:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of the N-Terminal Zn Binding Domain of Hiv-1 Integrase (E Form), uc(Nmr), 38 Structures


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the N-Terminal Zn Binding Domain of Hiv-1 Integrase (E Form), uc(Nmr), 38 Structures within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn56 b:0.0 occ:1.00 NE2 A:HIS12 2.0 0.0 1.0 ND1 A:HIS16 2.0 0.0 1.0 SG A:CYS40 2.3 0.0 1.0 SG A:CYS43 2.3 0.0 1.0 CE1 A:HIS16 3.0 0.0 1.0 CE1 A:HIS12 3.0 0.0 1.0 CD2 A:HIS12 3.0 0.0 1.0 CG A:HIS16 3.0 0.0 1.0 HB3 A:HIS16 3.1 0.0 1.0 HB2 A:CYS43 3.1 0.0 1.0 HA A:HIS16 3.1 0.0 1.0 HE1 A:HIS16 3.2 0.0 1.0 HE1 A:HIS12 3.2 0.0 1.0 HD2 A:HIS12 3.3 0.0 1.0 CB A:CYS43 3.3 0.0 1.0 CB A:CYS40 3.3 0.0 1.0 H A:CYS43 3.4 0.0 1.0 CB A:HIS16 3.4 0.0 1.0 HB2 A:CYS40 3.4 0.0 1.0 HB3 A:CYS40 3.5 0.0 1.0 HB2 A:LYS42 3.6 0.0 1.0 CA A:HIS16 3.8 0.0 1.0 N A:CYS43 3.9 0.0 1.0 NE2 A:HIS16 4.1 0.0 1.0 HB3 A:CYS43 4.1 0.0 1.0 ND1 A:HIS12 4.1 0.0 1.0 CD2 A:HIS16 4.2 0.0 1.0 CG A:HIS12 4.2 0.0 1.0 CA A:CYS43 4.2 0.0 1.0 HB2 A:HIS16 4.5 0.0 1.0 C A:HIS16 4.5 0.0 1.0 O A:HIS16 4.6 0.0 1.0 CB A:LYS42 4.7 0.0 1.0 HA A:CYS43 4.7 0.0 1.0 CA A:CYS40 4.7 0.0 1.0 O A:HIS12 4.8 0.0 1.0 C A:LYS42 4.8 0.0 1.0 H A:LYS42 4.9 0.0 1.0 HA A:VAL37 4.9 0.0 1.0 HA A:CYS40 5.0 0.0 1.0 HB3 A:LYS42 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of the N-Terminal Zn Binding Domain of Hiv-1 Integrase (E Form), uc(Nmr), 38 Structures


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the N-Terminal Zn Binding Domain of Hiv-1 Integrase (E Form), uc(Nmr), 38 Structures within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn56 b:0.0 occ:1.00 NE2 B:HIS12 2.0 0.0 1.0 ND1 B:HIS16 2.0 0.0 1.0 SG B:CYS40 2.3 0.0 1.0 SG B:CYS43 2.3 0.0 1.0 CE1 B:HIS16 3.0 0.0 1.0 CE1 B:HIS12 3.0 0.0 1.0 CD2 B:HIS12 3.0 0.0 1.0 CG B:HIS16 3.0 0.0 1.0 HB3 B:HIS16 3.1 0.0 1.0 HB2 B:CYS43 3.1 0.0 1.0 HA B:HIS16 3.1 0.0 1.0 HE1 B:HIS16 3.2 0.0 1.0 HE1 B:HIS12 3.2 0.0 1.0 HD2 B:HIS12 3.3 0.0 1.0 CB B:CYS40 3.3 0.0 1.0 CB B:CYS43 3.3 0.0 1.0 H B:CYS43 3.4 0.0 1.0 CB B:HIS16 3.4 0.0 1.0 HB2 B:CYS40 3.4 0.0 1.0 HB3 B:CYS40 3.5 0.0 1.0 HB2 B:LYS42 3.6 0.0 1.0 CA B:HIS16 3.8 0.0 1.0 N B:CYS43 3.9 0.0 1.0 NE2 B:HIS16 4.1 0.0 1.0 ND1 B:HIS12 4.1 0.0 1.0 HB3 B:CYS43 4.1 0.0 1.0 CD2 B:HIS16 4.2 0.0 1.0 CG B:HIS12 4.2 0.0 1.0 CA B:CYS43 4.2 0.0 1.0 HB2 B:HIS16 4.5 0.0 1.0 C B:HIS16 4.6 0.0 1.0 O B:HIS16 4.7 0.0 1.0 CB B:LYS42 4.7 0.0 1.0 HA B:CYS43 4.7 0.0 1.0 CA B:CYS40 4.7 0.0 1.0 O B:HIS12 4.8 0.0 1.0 C B:LYS42 4.8 0.0 1.0 H B:LYS42 4.9 0.0 1.0 HA B:VAL37 4.9 0.0 1.0 HA B:CYS40 5.0 0.0 1.0 HB3 B:LYS42 5.0 0.0 1.0 N B:HIS16 5.0 0.0 1.0

M.Cai, R.Zheng, M.Caffrey, R.Craigie, G.M.Clore, A.M.Gronenborn. Solution Structure of the N-Terminal Zinc Binding Domain of Hiv-1 Integrase. Nat.Struct.Biol. V. 4 567 1997.
ISSN: ISSN 1072-8368
PubMed: 9228950
DOI: 10.1038/NSB0797-567